Gene detail

Detailed information of HOLI00001.G50988 in Hydra oligactis

Genomic Location: HOLI00001:2515997...2517526
NR annotation: WP_095159632.1, PLP-dependent aminotransferase family protein [Pseudomonas sp. Irchel 3E13]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P77730	Uncharacterized HTH-type transcriptional regulator YdcR OS=Escherichia coli (strain K12) OX=83333 GN=ydcR PE=3 SV=1
Q796Q6	Uncharacterized HTH-type transcriptional regulator YisV OS=Bacillus subtilis (strain 168) OX=224308 GN=yisV PE=3 SV=1
P96681	Uncharacterized HTH-type transcriptional regulator YdfD OS=Bacillus subtilis (strain 168) OX=224308 GN=ydfD PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00392	GntR	Bacterial regulatory proteins, gntR family	Domain	Interproscan
PF00155	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000524	Domain	Transcription regulator HTH, GntR	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR051446	Family	HTH-type transcriptional regulator with aminotransferase domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR004839	Domain	Aminotransferase, class I/classII	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46577	HTH-TYPE TRANSCRIPTIONAL REGULATORY PROTEIN GABR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan