Gene detail

Detailed information of HOLI00001.G51221 in Hydra oligactis

Genomic Location: HOLI00001:2820243...2822006
NR annotation: WP_095157978.1, ABC transporter transmembrane domain-containing protein [Pseudomonas sp. Irchel 3E13]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q7NZU6	ATP-dependent lipid A-core flippase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK) OX=243365 GN=msbA PE=3 SV=1
Q3SFZ6	ATP-dependent lipid A-core flippase OS=Thiobacillus denitrificans (strain ATCC 25259 / T1) OX=292415 GN=msbA PE=3 SV=1
Q9FNU2	ABC transporter B family member 25 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCB25 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00664	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan
PF00005	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039421	Family	Type 1 protein exporter	Interproscan
IPR011527	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR036640	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR011918	Family	ABC transporter, ATP-binding/permease protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43394	ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0015421	Molecular Function	ABC-type oligopeptide transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06147	ABCB-BAC; ATP-binding cassette, subfamily B, bacterial	-	Transporters	ko02000	deepkoala