Gene detail

Detailed information of HOLI00001.G51228 in Hydra oligactis

Genomic Location: HOLI00001:2831422...2832347
NR annotation: WP_042124271.1, pseudouridine synthase [Pseudomonas japonica]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q09709	Pseudouridylate synthase C18B11.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC18B11.02c PE=3 SV=1
Q8IZ73	Pseudouridylate synthase RPUSD2 OS=Homo sapiens OX=9606 GN=RPUSD2 PE=1 SV=2
Q12362	Bifunctional protein RIB2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RIB2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00849	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006224	Conserved_site	Pseudouridine synthase, RluA-like, conserved site	Interproscan
IPR006145	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan
IPR050188	Family	RluA Pseudouridine Synthase	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21600	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0000455	Biological Process	enzyme-directed rRNA pseudouridine synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06177	rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase	EC:5.4.99.28 EC:5.4.99.29	Transfer RNA biogenesis	ko03016	deepkoala