Gene detail

Detailed information of HOLI00001.G51634 in Hydra oligactis

Genomic Location: HOLI00001:3360988...3361197
NR annotation: WP_008365925.1, MULTISPECIES: cold-shock protein [Pseudomonas]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
P0A106	Cold shock protein CapB OS=Pseudomonas fragi OX=296 GN=capB PE=1 SV=1
P0A105	Cold shock protein CapB OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=capB PE=3 SV=1
P95459	Major cold shock protein CspA OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=cspA PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	CSD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050181	Family	Cold shock domain-containing protein	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan
IPR012156	Family	Cold shock, CspA	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR019844	Domain	Cold-shock (CSD) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11544	COLD SHOCK DOMAIN CONTAINING PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03704	cspA; cold shock protein	-	Transcription	-	deepkoala