Gene detail

Detailed information of HOLI00001.G51680 in Hydra oligactis

Genomic Location: HOLI00001:3428805...3431228
NR annotation: WP_262128313.1, endopeptidase La [Pseudomonas sp. 5P_5.1_Bac1]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00001.g51680.t1

ATGAGCGACCAGCAGGATCTCCCGGAACATCCAGACGATTACGCCGACAGCGAACATTTCGAAGCCGCCGATCCCACCGGCCGCACCCTCGCCCTGCCCGGCCAACAGTTGCCGGACAAGGTCTATGTGATCCCGATTCACAATCGCCCGTTCTTCCCCGCGCAGGTGCTGCCGGTGATCGTCAACGAAGAACCCTGGGCAGAAACCCTCGACCTGGTGGCGAAGACCCCGCACCACTCGCTGGCGCTGTTCTTCATGGACACGCCGCTGGAGGACCACCGTCATTTCGACACCTCGGCCCTGCCGCTGTACGGCACCCTGGTCAAGGTGCACCACGCCAGCCGCGAAAACGGCAAGCTGCAGTTCGTCGCCCAGGGCCTGACCCGGGTGCGCATCCGCACCTGGCTCAAGCACCATCGCCCACCGTACCTGGTGGAAGTGGAATACCCGCACCAGAGCCCTGAGCCCACCGACGAGGTCAAGGCCTACGGCATGGCCCTGATCAACGCGATCAAGGAACTGCTGCCGCTCAACCCGCTGTATAGCGAAGAGCTGAAGAACTACCTCAACCGCTTCAGCCCCAACGACCCGTCGCCACTGACCGACTTCGCCGCCGCCCTGACCTCGGCCACCGGTCTGCAGTTACAGGAAGTGCTCGACTGCGTGCCGATGCTCAAGCGCATGGAAAAAGTCCTGCCGATGCTGCGCAAGGAAGTCGAAGTCGCGCGCCTGCAGAACGAAATCTCCGCCGAGGTGAACCGGCAGATCGGCGAGCACCAGCGCGAGTTCTTCCTCAAGGAACAGCTCAAGGTGATCCAGCAGGAGCTGGGCCTGACCAAGGACGACCGCAGCGCCGACCTCGAGCAGTTCAAGCAGCGCCTGCAGGACAAGACCCTGCCGCCCGCCGCGCAGAAACGCATCGACGAAGAACTGGGCAAGCTGGCGATCCTCGAAACCGGTTCGCCGGAGTACGCAGTCACCCGCAACTACCTGGACTGGGCCACGGCCCTGCCGTGGGGCGTGTATGGCAAAGACAAGCTGAGCCTCAAGCACGCACGCAAGGTGCTCGACCAGCACCACGCCGGGCTCGACGACATCAAGGAACGCATCCTCGAATTCCTCGCCGTGGGCGCCTACAAAGGCGAGATCAGCGGCTCGATCGTGTTGCTGGTGGGGCCGCCTGGCGTGGGCAAGACCAGCATCGGCAAGTCCATCGCCGAGTCCCTGGGTCGACCGTTCTACCGCTTCAGCGTTGGCGGCATGCGTGACGAGGCCGAGATCAAGGGCCATCGCCGCACCTACATCGGCGCGCAGCCGGGCAAGCTGGTGCAGGCGCTGAAAGACGTCGAAGTGATGAACCCGGTGATCATGCTCGACGAGATCGACAAGATGGGCCAGAGCTACCAGGGCGATCCCGCCTCGGCGCTGCTGGAAACCCTCGATCCCGAGCAGAACGTCGACTTCCTCGACCACTACCTCGACCTGCGCCTGGACCTGTCCAAGGTGCTGTTCGTGTGTACCGCCAACACCCTGGATTCGATTCCCGGACCGTTGCTCGACCGTATGGAAGTGATCCGCCTGTCCGGCTACATCACCGAAGAAAAACTTGCCATCGCCAAACGTCACCTGTGGCCCAAGCAGTTGCAGAAAGCCGGCGTGGCGAAAACCAGCCTGAGCATCACCGATGCCGCACTGCGCAGCGTCATCGAGGGCTACGCTCGCGAGGCCGGTGTGCGGCAACTGGAAAAGCAGTTGGGCAAACTGGTGCGCAAAGCCGTGGTGCGCTTGCTCGATGAGCCCGACGCAGTGGTCAAGATCACCCCCAAGGACCTCGAAGCCGCACTGGGCATGCCGGTGTTCCGCAGCGAACAGGTACTGGCGGGCAAGGGCGTGATCACCGGCCTTGCCTGGACCAGCATGGGCGGCGCCACCTTGCCGATCGAAGCCACGCGTATTCACACGCTGAACCGCGGTTTCAAACTCACCGGGCAACTGGGCGACGTGATGAAGGAGTCCGCCGAGATCGCCTACAGCTACGTCAGCTCGCACCTGAAGCAGTTCGGCGGTGACCCGACCTTCTTCAACGAAGCCTTCGTCCACCTGCACGTGCCGGAAGGCGCCACGCCGAAGGACGGGCCGAGTGCCGGGGTGACCATGGCCAGCGCCCTGCTGTCGCTGGCCCGCGACCAGTCGCCGAAAAAAGGCGTGGCCATGACCGGCGAGTTGACCTTGACCGGGCATGTGCTGCCCATTGGCGGGGTGCGCGAAAAGGTGATTGCGGCGCGGCGGCAGAAGATCTTCGAACTGATCCTGCCGGAGGCGAACCGTGGCGACTTCCTCGAATTGCCGGACTACCTGAAAGAAGGCCTGACCGTGCATTTCGCCAAGCGCTTCGGCGATGTGGCGAAGGTGTTGTTCACCTGA

Transcript

HOLI00001.g51680.t1

Protein

Uniprot

Uniprot term	Description
Q31FD3	Lon protease 2 OS=Hydrogenovibrio crunogenus (strain DSM 25203 / XCL-2) OX=317025 GN=lon2 PE=3 SV=2
A0L516	Lon protease OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) OX=156889 GN=lon PE=3 SV=1
Q3A701	Lon protease 1 OS=Syntrophotalea carbinolica (strain DSM 2380 / NBRC 103641 / GraBd1) OX=338963 GN=lon1 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02190	LON_substr_bdg	ATP-dependent protease La (LON) substrate-binding domain	Family	Interproscan
PF05362	Lon_C	Lon protease (S16) C-terminal proteolytic domain	Domain	Interproscan
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004815	Family	Lon protease, bacterial/eukaryotic-type	Interproscan
IPR003111	Domain	Lon protease, N-terminal domain	Interproscan
IPR008269	Domain	Peptidase S16, Lon proteolytic domain	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR027065	Family	Lon protease	Interproscan
IPR027543	Family	Lon protease, bacterial	Interproscan
IPR015947	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR046336	Homologous_superfamily	Lon protease, N-terminal domain superfamily	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR008268	Active_site	Peptidase S16, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43718	LON PROTEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0004176	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0004252	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006515	Biological Process	protein quality control for misfolded or incompletely synthesized proteins	Interproscan
GO:0030163	Biological Process	protein catabolic process	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01338	lon; ATP-dependent Lon protease	EC:3.4.21.53	Peptidases and inhibitors	ko01002	deepkoala