Detailed information of HOLI00001.G52066 in Hydra oligactis

Genomic Location: HOLI00001:3917740...3918702
NR annotation: WP_095154402.1, MULTISPECIES: 23S rRNA pseudouridine(1911/1915/1917) synthase RluD [unclassified Pseudomonas]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P33640Ribosomal large subunit pseudouridine synthase D OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rluD PE=3 SV=2
Q8ZBV7Ribosomal large subunit pseudouridine synthase D OS=Yersinia pestis OX=632 GN=rluD PE=3 SV=1
Q87S65Ribosomal large subunit pseudouridine synthase D OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=rluD PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00849PseudoU_synth_2RNA pseudouridylate synthaseFamilyInterproscan
PF01479S4S4 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006145DomainPseudouridine synthase, RsuA/RluA-likeInterproscan
IPR020103Homologous_superfamilyPseudouridine synthase, catalytic domain superfamilyInterproscan
IPR006225FamilyPseudouridine synthase, RluC/RluDInterproscan
IPR002942DomainRNA-binding S4 domainInterproscan
IPR050188FamilyRluA Pseudouridine SynthaseInterproscan
IPR036986Homologous_superfamilyRNA-binding S4 domain superfamilyInterproscan
IPR006224Conserved_sitePseudouridine synthase, RluA-like, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21600MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0001522Biological Processpseudouridine synthesisInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0009451Biological ProcessRNA modificationInterproscan
GO:0009982Molecular Functionpseudouridine synthase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06180rluD; 23S rRNA pseudouridine1911/1915/1917 synthaseEC:5.4.99.23
Ribosome biogenesisko03009deepkoala

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