Detailed information of HOLI00001.G52119 in Hydra oligactis

Genomic Location: HOLI00001:3986151...3987470
NR annotation: WP_042125742.1, tRNA pseudouridine(55) synthase TruB [Pseudomonas japonica]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A5W985tRNA pseudouridine synthase B OS=Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1) OX=351746 GN=truB PE=3 SV=1
B0KHX6tRNA pseudouridine synthase B OS=Pseudomonas putida (strain GB-1) OX=76869 GN=truB PE=3 SV=1
Q1IF41tRNA pseudouridine synthase B OS=Pseudomonas entomophila (strain L48) OX=384676 GN=truB PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09157TruB-C_2Pseudouridine synthase II TruB, C-terminalDomainInterproscan
PF02033RBFARibosome-binding factor AFamilyInterproscan
PF01509TruB_NTruB family pseudouridylate synthase (N terminal domain)FamilyInterproscan
PF16198TruB_C_2tRNA pseudouridylate synthase B C-terminal domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014780FamilytRNA pseudouridine synthase II, TruBInterproscan
IPR015240DomaintRNA pseudouridine synthase II, TruB, subfamily 1, C-terminalInterproscan
IPR000238FamilyRibosome-binding factor AInterproscan
IPR002501DomainPseudouridine synthase II, N-terminalInterproscan
IPR036974Homologous_superfamilyPUA domain superfamilyInterproscan
IPR032819DomaintRNA pseudouridylate synthase B, C-terminalInterproscan
IPR020103Homologous_superfamilyPseudouridine synthase, catalytic domain superfamilyInterproscan
IPR023799Homologous_superfamilyRibosome-binding factor A domain superfamilyInterproscan
IPR015947Homologous_superfamilyPUA-like superfamilyInterproscan
IPR020053Conserved_siteRibosome-binding factor A, conserved siteInterproscan
IPR015946Homologous_superfamilyK homology domain-like, alpha/betaInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13767TRNA-PSEUDOURIDINE SYNTHASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0001522Biological Processpseudouridine synthesisInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0009451Biological ProcessRNA modificationInterproscan
GO:0009982Molecular Functionpseudouridine synthase activityInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0006400Biological ProcesstRNA modificationInterproscan
GO:1990481Biological ProcessmRNA pseudouridine synthesisInterproscan

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