Gene detail

Detailed information of HOLI00001.G52120 in Hydra oligactis

Genomic Location: HOLI00001:3987592...3990105
NR annotation: WP_191831491.1, translation initiation factor IF-2 [Pseudomonas fluorescens]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00001.g52120.t1

ATGACGCAAGTCACGGTGAAAGAATTGGCCCAAGAGGTCGCTGCACCGGTAGAGCGCCTGCTGCAGCAGATGCGTGAGGCAGGTCTGCCGCACACCGACGCCGGTCAGTTTGTGACCGACAGTGAGAAGCAGGCTCTGCTGACTCATTTGAAAAGCAGCCACAAGGCAAAAGTGGAAGAACCGCGCAAGATCACCTTGCAGCGTAAAACCACCAGCACCCTGCGTGTTGCCGGTAGCAAGAGCATCAGCGTAGAAGTACGCAAGAAGAAAGTTTTCGTCCAGCGCAGCCCGGAAGAAGTCCAGGCTGAGCAGAAGCGTGAGCTGGAAGAGCGCCGCGCCGTTGAAAACGCCGCCCGCGAGAAGTCGGAAAACGAAGCGCGTCAGCGCGCTGAAGAAGACGCACGCCGTCAGCCAGCCGCTGCACAAGCTGCTCAACCGGCCGCAGCACCTGCTGCCCAGCCTGCGGCCGCACCTGCTGCTGTAGCGGCGGTCGAAGCTGCGCCTGCACCTGTTGGCGAGCGCAAGAAAGACGAAAGCCGTCGCAACGACAAGTCTCGTGATGACGATCGTCGTGGTGGCGAGCGCCGCAACGAAGCGCCGCGTGTATCGGTCAAGGTCAAGGAGAAAGAAAAAGCTCCTGCACCGCGTGCCGCTCCACGCACTACCGACGAAGAAAGCGATGGCTTCCGTCGTGGCGGTCGTGGCAAGGGCAAGCCGAAGAAACGCAACGCCCACGGTTTCCAGAACCCGACCGGTCCGGTCATTCGCGATGTCACCATCGGCGAGACCATCACTGTGTCCGAGCTGGCGCAGCAGATGTCGGTCAAGGGCGCTGAAGTCGTCAAGTTCATGTTCAAGCTGGGCACTCCGGTGACCATCAACCAGGTGCTCGATCAGGAAACTGCTCAGCTCGTTGCCGAAGAGTTGGGCCACAAGGTCACTCTGGTCAGCGATACCGCCCTGGAAGATTCCCTGGCCGAATCGCTGAAGTTCGAAGGTGAGACCTTCTCCCGTGCTCCGGTCGTGACCGTAATGGGCCACGTTGACCACGGTAAGACCTCGCTGCTCGACTACATCCGTCGTGCCAAGGTAGCTGCAGGCGAAGCCGGCGGCATCACCCAGCACATCGGCGCCTACCACGTGGAAACCGACCGCGGCATGGTCACCTTCCTCGATACCCCGGGTCACGCCGCGTTTACCGCAATGCGTGCCCGTGGTGCCAAGGCTACCGACATCGTGATCCTGGTGGTCGCAGCGGACGACGGCGTAATGCCGCAGACCCGCGAAGCGGTTCAGCATGCCAAGGCTGCGGGTGTTCCGCTGGTCGTGGCGGTGAACAAGATCGACAAGCCAGGCGCAGACCTCGACCGCATCCGCAACGAGCTGTCGGTTGAAGGCGTGACCTCCGAGGACTGGGGTGGAGATACTCCATTCGTCAAGGTTTCGGCGAAGATGGGTACCGGCGTCGACGAACTGCTTGAAGCCGTTCTGCTGCAGGCCGAGATCCTCGAGCTGAAGGCCACTCCATCCGCGCCAGGTCGTGGTGTCGTGGTTGAGTCCCGTCTGGACAAAGGCCGTGGCCCGGTAGCCACTGTCCTGGTTCAGGACGGTACTCTGCGCCAGGGCGACATGGTTCTGTGCGGTTCCAACTATGGCCGCGTTCGCGCCATGCTCGACGAGAACGGCAAGCCAGTGAAAGAAGCCGGCCCGGCGATCCCGGTCGAGATTCTTGGTCTGGACGGTACTCCGGATGCCGGTGATGAGCTGTCCGTAGTGGCTGACGAGAAGAAAGCCCGCGAAGTCGCCCTGTTCCGCCAAGGCAAGTTCCGCGAAGTCAAACTGGCTCGCGCACATGCTGGCAAACTCGAAAACATCTTCGAGAACATGGGGCAGGAAGAGAAGAAAACCCTCAACATCGTCCTCAAGGCCGACGTTCGTGGTTCTCTCGAGGCTCTGCAAGGCTCGCTCGGCGGCCTGGGCAACGATGAAGTTCAAGTCCGCGTCATTGGTGGCGGTGTCGGTGGTATCACCGAAAGCGACGCCAACCTGGCCCTGGCCTCGAACGCCGTACTGTTTGGCTTCAACGTTCGTGCCGATGCCGGCGCGCGCAAGATCGTCGAGCAGGAAGGTCTGGATATGCGTTACTACAACGTGATCTACGACATCATCGAAGACGTCAAGAAAGCCCTGACCGGTATGCTCGGCAGCGATGTTCGCGAGAACATCCTGGGTATCGCCGAAGTGCGTGACGTGTTCCGTTCGCCGAAGTTCGGTGCCATCGCCGGTTGCATGGTGATCGAAGGTACGGTTTACCGTAACCGTCCGATCCGTGTTCTGCGCGAAGACGTCGTTATCTTCGAAGGCGAGCTGGAATCGCTGCGTCGCTTCAAGGACGATGCCTCCGAAGTTCGTGCCGGCATGGAGTGCGGTATCGGCGTCAAGAGCTACAACGACGTCAAGGTCGGCGACAAGATCGAAGTCTTCGAGAAAGTCCAGGTGGCTCGTACGCTCTGA

Transcript

HOLI00001.g52120.t1

Protein

Uniprot

Uniprot term	Description
B0KHX8	Translation initiation factor IF-2 OS=Pseudomonas putida (strain GB-1) OX=76869 GN=infB PE=3 SV=1
Q88DV7	Translation initiation factor IF-2 OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=infB PE=3 SV=1
A5W987	Translation initiation factor IF-2 OS=Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1) OX=351746 GN=infB PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF04760	IF2_N	Translation initiation factor IF-2, N-terminal region	Domain	Interproscan
PF11987	IF-2	Translation-initiation factor 2	Domain	Interproscan
PF08364	IF2_assoc	Bacterial translation initiation factor IF-2 associated region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR000178	Family	Translation initiation factor IF-2, bacterial-like	Interproscan
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR036925	Homologous_superfamily	Translation initiation factor IF-2, domain 3 superfamily	Interproscan
IPR015760	Family	Translation initiation factor IF- 2	Interproscan
IPR006847	Domain	Translation initiation factor IF-2, N-terminal	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR009061	Homologous_superfamily	Putative DNA-binding domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR044145	Domain	Translation initiation factor IF-2, domain II	Interproscan
IPR023115	Domain	Translation initiation factor IF- 2, domain 3	Interproscan
IPR013575	Domain	Initiation factor 2 associated domain, bacterial	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43381	TRANSLATION INITIATION FACTOR IF-2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02519	infB, MTIF2; translation initiation factor IF-2	-	Mitochondrial biogenesis	ko03029	deepkoala