Gene detail

Detailed information of HOLI00001.G52227 in Hydra oligactis

Genomic Location: HOLI00001:4111704...4113289
NR annotation: GEY80396.1, lipoyl synthase, chloroplastic [Tanacetum cinerariifolium]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
B1J144	Lipoyl synthase OS=Pseudomonas putida (strain W619) OX=390235 GN=lipA PE=3 SV=1
A5W9I5	Lipoyl synthase OS=Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1) OX=351746 GN=lipA PE=3 SV=1
Q88DM5	Lipoyl synthase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=lipA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan
PF16881	LIAS_N	N-terminal domain of lipoyl synthase of Radical_SAM family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000544	Family	Octanoyltransferase	Interproscan
IPR045864	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR007197	Domain	Radical SAM	Interproscan
IPR003698	Family	Lipoyl synthase	Interproscan
IPR020605	Conserved_site	Octanoyltransferase, conserved site	Interproscan
IPR004143	Domain	Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain	Interproscan
IPR006638	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR031691	Domain	Lipoyl synthase, N-terminal	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10949	LIPOYL SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0009249	Biological Process	protein lipoylation	Interproscan
GO:0033819	Molecular Function	lipoyl(octanoyl) transferase activity	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0009107	Biological Process	lipoate biosynthetic process	Interproscan
GO:0016992	Molecular Function	lipoate synthase activity	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0036211	Biological Process	protein modification process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03644	lipA, LIAS, LIP1, LIP5; lipoyl synthase	EC:2.8.1.8	Lipoic acid metabolism	ko00785	deepkoala