Detailed information of HOLI00001.G52350 in Hydra oligactis

Genomic Location: HOLI00001:4243034...4244159
NR annotation: TRZ03252.1, hypothetical protein DNTS_011983 [Danionella translucida]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
B1JE12Large ribosomal subunit protein uL1 OS=Pseudomonas putida (strain W619) OX=390235 GN=rplA PE=3 SV=1
Q1IFX6Large ribosomal subunit protein uL1 OS=Pseudomonas entomophila (strain L48) OX=384676 GN=rplA PE=3 SV=1
C3K2Y6Large ribosomal subunit protein uL1 OS=Pseudomonas fluorescens (strain SBW25) OX=216595 GN=rplA PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03946Ribosomal_L11_NRibosomal protein L11, N-terminal domainDomainInterproscan
PF00298Ribosomal_L11Ribosomal protein L11, RNA binding domainDomainInterproscan
PF00687Ribosomal_L1Ribosomal protein L1p/L10e familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR020784DomainLarge ribosomal subunit protein uL11, N-terminalInterproscan
IPR000911FamilyRibosomal protein uL11Interproscan
IPR036769Homologous_superfamilyLarge ribosomal subunit protein uL11, C-terminal domain superfamilyInterproscan
IPR028364FamilyRibosomal protein uL1/ribosomal biogenesis proteinInterproscan
IPR023673Conserved_siteLarge ribosomal subunit protein uL1, conserved siteInterproscan
IPR006519FamilyLarge ribosomal subunit protein uL11, bacterial-typeInterproscan
IPR020783DomainLarge ribosomal subunit protein uL11, C-terminalInterproscan
IPR036796Homologous_superfamilyLarge ribosomal subunit protein uL11, N-terminal domain superfamilyInterproscan
IPR005878FamilyLarge ribosomal subunit protein uL1, bacterial-typeInterproscan
IPR016095Homologous_superfamilyLarge ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainInterproscan
IPR020785Conserved_siteLarge ribosomal subunit protein uL11, conserved siteInterproscan
IPR023674Homologous_superfamilyRibosomal protein uL1-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR3642754S RIBOSOMAL PROTEIN L1, MITOCHONDRIALInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0022625Cellular Componentcytosolic large ribosomal subunitInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0015934Cellular Componentlarge ribosomal subunitInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02863RP-L1, MRPL1, rplA; large subunit ribosomal protein L1-Ribosomeko03011deepkoala

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