Gene detail

Detailed information of HOLI00001.G52428 in Hydra oligactis

Genomic Location: HOLI00001:4349158...4352267
NR annotation: RMP42433.1, Prolyl oligopeptidase protein [Pseudomonas amygdali pv. lachrymans]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00001.g52428.t1

ATGATCAAGCTCAACGAAAGCGCGGCGCTGATCGGCGAACTGATCGACGGCGAGCGTGACGTGACGGCGATCATCGCCCTGCTCGACGAGAAATTCCCCGGGGTTCCCGAGCTCGCTGAAGACATCGAGCAATTCATGGAGGTGGCCCGCCTGCCGCTTTGGCTGCTGGCCGAACTCACCTACCGTTGCCCGCTGCAATGCCCGTACTGCTCCAACCCGCTGGACTTCGCCGCCCTCGGCCAGGAACTGACCACTGAACAGTGGTTCAAGGTCATGGCCGAAGCGCGCGAAATGGGTGCGGCGCAACTGGGCTTCTCCGGCGGCGAGCCGCTGGTGCGCCAGGACCTTGCCGAACTGATCGGCGAGGGTCGCCGACTGGGTTACTACACCAACCTGATCACCTCCGGCATCGGTCTGACCGAGCAGAAGATCGCCGCCTTCAAGAAGGCCGGGCTGGACCATATCCAGATCAGCTTCCAGGCCAGCGACGAGCAGGTGAACAACCTCCTGGCCGGCTCGAAAAAGGCCTTCGCACAGAAGCTGGAAATGGCCCGGGCCGTGAAAGCCCAGGGCTATCCGATGGTGCTGAACTTCGTCACCCACCGGCACAACATCGACCGCATCGACCGCATCATCGAGCTGTGCATTGCCCTCGAAGCCGACTTCGTCGAACTCGCCACCTGCCAGTTCTACGGCTGGGCGCACCTGAACCGGGTCGGCCTGCTGCCGACCCGCGCCCAACTGGAACGCGCCGAGCGCATCACCAACGAATACCGTGAGCGGCTCAAGGCCGCCGGCAACCCCTGCAAGCTGATCTTCGTCACCCCGGACTACTACGAAGAGCGCCCCAAAGGCTGCATGAACGGCTGGGGCAGCGTGTTTCTCACCGTGACCCCGGACGGCACCGCCCTGCCCTGCCACGGCGCGCGGCAACTGCCGGTGCAGTTTCCCAACGTGCGCGAGCACAGCATGCAGCACATCTGGTACGACTCATTCGGATTCAACCGCTATCGTGGTTATGACTGGATGCCTGAGCCCTGCCGCTCCTGCGACGAAAAGGAGCGTGATTTCGGCGGCTGCCGTTGTCAGGCGTTCATGCTCACCGGCGATGCCAGCAAGGCCGACCCGGTCGCCGAGCAAGCGGTTACCGCCGGCACCGACTTCGCCGAACTGAAAGTCGGTCGCCACGGTTTGTTCTGGAACGAATTTCGCCCGCGTGATGGCGCCTGCCGGCTGTGGCACTGGCGCGACGGCCAGGCCCATTGCCTGACCCCCGACGGTTTCAGCGCCCGCAGCCGGGTCTACGAATATGGCGGCGGCGCGTTCTGCCTGAGCGATGACGGGCTGGTGTTCGTCAACGAGGCGGACCAGCAGTTGTATCGGCAGTCACTGGACGGCAGCCGGCCGTCAGCAATCCTCCCAACGCCCGACGAGAAACGCCGCTACGGCGATCTGGTCTGGGCTGGCGGACGGGTGCTGGCGGTCGAAGAAAGCCACGCCGTCGATCAGGTGCAACATCGGCTGGTGGCGATTGCCCTCAATGGCGAGCGCGAGGTACTGGCCGAAGGCGCGGACTTCTACGCCTCACCAACCCTCAGCGCAGACGGCCAGCGCCTGGCCTGGATCGAATGGAGCCGGCCAGAGCAGCCCTGGACCGCGACCCGGCTGTATGTTCGCGAGGGGGCTGGCGAGCCGCGCTGCATTGCCGGTGACGGCACGCCGCAGTCGTTGCAGCAGCCCCGCTTCGACGCCCATGGCCGGCTGTTCTGCCTGTCTGACCGCAACGGCTACTGGCAGCCGTGGGCTGAAGTCGACGGCGACTGGCAAGCGCTGCCTGCCGCTGCCGCCGACCATGCCGCCGCACCCTGGCAACTCGGCGCCAGCACCTGGTGCCCGCTGCCGGACGGTTACCTCGCCACCTGGTTCGAAGACGGCTTCGCCCGCCTGGGCGTGCAAGCACACCATGGCGAAACACAGCCATTCGCCAGCGACTGGAGCCGCTTTCGCTGCCTCGACCTGGACGCCCAGCACTACTACGCCATTGCCGCCTCAGCGGTGAGCCCGGCGGCGGTGATCGCCATCGACCGCCACGACCATCGGGTCCAGGTGCTGGCCGGGGGTGTCGCCCCGCTGCCCGCCGAGCACATCAGCCAGCCACGCGGATTCAGCTATCCCAGCGGCGATGGCGAAGCCCATGGGTTCTTTTATCCGGCCATGAGCGGCAGTGCGCCTGCGCCGCTGGTGGTCTTCGTGCATGGCGGGCCGACGTCGGCCTGCTACCCGGTGCTCGACCCGCGCATTCAGTACTGGGCGCAACGCGGATTCGCCGTGGCCGACCTCAATTACCGCGGCAGCAGCGGCTATGGCCGGGCGTACCGACAGGCGCTACACCTGCGCTGGGGTGAAGTGGACGTGGAGGATGCCTGCGCGGCGGTCGCTTATCTGGCGGGTGAAGGGTTGGTCGATCCACAGCAGGCGTTCATCCGCGGTGGCAGCGCCGGCGGCTATACCACGCTGTGCGCCCTCGCCTTCCATGACGTATTCCGTGCCGGCGCCAGCCTGTACGGCGTCAGCGACCCGCTGGCGCTGGCCAGGGCCACGCACAAGTTCGAAGGGGATTATCTGGACTGGCTGATCGGTGATCCGCAGCGTGACGCCGAACGCTACCGGGCGCGCACGCCGCTGCTGCATGCCCACGACATCAAGGTGCCGGTGATTTTCTTCCAGGGCGAACTGGATGCCGTGGTAGTACCGGAGCAGACGCGCTCGATGCTGGCGGCGCTGAAGGCCAACGGCATCGAGGCGGTCGGGCACTTTTACCCGACCGAGCGACATGGCTTCAGGACGGCGGCGAACCTGGCTCATGCGCTGGAAGAGGAATGGCGGTTCTACAGCAGGATTCTGGCCCCAGGCGGATCCTGA

Transcript

HOLI00001.g52428.t1

Protein

Uniprot

Uniprot term	Description
Q88QV8	PqqA peptide cyclase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=pqqE PE=3 SV=1
A5VXG4	PqqA peptide cyclase OS=Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1) OX=351746 GN=pqqE PE=3 SV=1
Q4K4U8	PqqA peptide cyclase OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=pqqE PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00326	Peptidase_S9	Prolyl oligopeptidase family	Domain	Interproscan
PF05402	PqqD	Coenzyme PQQ synthesis protein D (PqqD)	Family	Interproscan
PF13353	Fer4_12	4Fe-4S single cluster domain	Domain	Interproscan
PF13186	SPASM	Iron-sulfur cluster-binding domain	Domain	Interproscan
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050585	Family	Xaa-Pro dipeptidyl-peptidase/Cocaine esterase	Interproscan
IPR001375	Domain	Peptidase S9, prolyl oligopeptidase, catalytic domain	Interproscan
IPR007197	Domain	Radical SAM	Interproscan
IPR023885	Domain	4Fe4S-binding SPASM domain	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR029058	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR006638	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR041881	Homologous_superfamily	Coenzyme PQQ synthesis protein D superfamily	Interproscan
IPR008792	Family	Coenzyme PQQ synthesis protein D	Interproscan
IPR011843	Family	Coenzyme PQQ biosynthesis protein E, bacteria	Interproscan
IPR000385	Conserved_site	MoaA/NifB/PqqE, iron-sulphur binding, conserved site	Interproscan
IPR022479	Family	Coenzyme PQQ synthesis D, bacteria	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43056	PEPTIDASE S9 PROLYL OLIGOPEPTIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008236	Molecular Function	serine-type peptidase activity	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0018189	Biological Process	pyrroloquinoline quinone biosynthetic process	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0048038	Molecular Function	quinone binding	Interproscan