Gene detail

Detailed information of HOLI00001.G52525 in Hydra oligactis

Genomic Location: HOLI00001:4478764...4479729
NR annotation: WP_175652741.1, L-carnitine dehydrogenase [Pseudomonas sp. Marseille-P9899]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q88R32	L-carnitine dehydrogenase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=lcdH PE=3 SV=1
D7URM0	L-carnitine dehydrogenase OS=Pseudomonas sp. OX=306 GN=Xt-cdh PE=1 SV=1
Q9HTH8	L-carnitine dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=cdhA PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02737	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan
PF00725	3HCDH	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013328	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan
IPR008927	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR006176	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan
IPR006108	Domain	3-hydroxyacyl-CoA dehydrogenase, C-terminal	Interproscan
IPR026578	Family	L-carnitine dehydrogenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48075	3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0050104	Molecular Function	L-gulonate 3-dehydrogenase activity	Interproscan
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0070403	Molecular Function	NAD+ binding	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17735	lcdH, cdhA; carnitine 3-dehydrogenase	EC:1.1.1.108	Enzymes with EC numbers	-	deepkoala