Detailed information of HOLI00001.G52829 in Hydra oligactis

Genomic Location: HOLI00001:4877009...4879251
NR annotation: RMO56206.1, Methionyl-tRNA formyltransferase [Pseudomonas syringae pv. aptata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q88RR3Ribosomal RNA small subunit methyltransferase B OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=rsmB PE=3 SV=1
Q88B41Ribosomal RNA small subunit methyltransferase B OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=rsmB PE=3 SV=1
Q9I7A9Ribosomal RNA small subunit methyltransferase B OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rsmB PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01029NusBNusB familyDomainInterproscan
PF00551Formyl_trans_NFormyl transferaseDomainInterproscan
PF01189Methyltr_RsmB-F16S rRNA methyltransferase RsmB/FFamilyInterproscan
PF02911Formyl_trans_CFormyl transferase, C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004573FamilyrRNA small subunit methyltransferase BInterproscan
IPR006027DomainNusB/RsmB/TIM44Interproscan
IPR018314Conserved_siteBacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved siteInterproscan
IPR036477Homologous_superfamilyFormyl transferase, N-terminal domain superfamilyInterproscan
IPR001555Active_sitePhosphoribosylglycinamide formyltransferase, active siteInterproscan
IPR035926Homologous_superfamilyNusB-like superfamilyInterproscan
IPR023267FamilyRNA (C5-cytosine) methyltransferaseInterproscan
IPR002376DomainFormyl transferase, N-terminalInterproscan
IPR005794FamilyMethionyl-tRNA formyltransferaseInterproscan
IPR049560DomainSAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic coreInterproscan
IPR001678DomainSAM-dependent methyltransferase RsmB-F/NOP2-type domainInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR011034Homologous_superfamilyFormyl transferase-like, C-terminal domain superfamilyInterproscan
IPR041711DomainMethionyl-tRNA formyltransferase, N-terminal domainInterproscan
IPR005793DomainFormyl transferase, C-terminalInterproscan
IPR044135DomainMethionyl-tRNA formyltransferase, C-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11138METHIONYL-TRNA FORMYLTRANSFERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0008649Molecular FunctionrRNA methyltransferase activityInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0009058Biological Processbiosynthetic processInterproscan
GO:0001510Biological ProcessRNA methylationInterproscan
GO:0008173Molecular FunctionRNA methyltransferase activityInterproscan
GO:0004479Molecular Functionmethionyl-tRNA formyltransferase activityInterproscan
GO:0071951Biological Processconversion of methionyl-tRNA to N-formyl-methionyl-tRNAInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03500rsmB, sun; 16S rRNA (cytosine967-C5)-methyltransferaseEC:2.1.1.176
Ribosome biogenesisko03009deepkoala

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