Gene detail

Detailed information of HOLI00001.G52875 in Hydra oligactis

Genomic Location: HOLI00001:4939004...4939678
NR annotation: WP_009395004.1, MULTISPECIES: heavy metal response regulator transcription factor [Pseudomonas]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q44006	Transcriptional activator protein CzcR OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) OX=266264 GN=czcR PE=2 SV=1
I1WSZ4	Transcriptional activator protein IrlR OS=Burkholderia pseudomallei (strain 1026b) OX=884204 GN=irlR PE=3 SV=1
P0DMK7	Transcriptional activator protein IrlR OS=Burkholderia pseudomallei (strain K96243) OX=272560 GN=irlR PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00072	Response_reg	Response regulator receiver domain	Domain	Interproscan
PF00486	Trans_reg_C	Transcriptional regulatory protein, C terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR001867	Domain	OmpR/PhoB-type DNA-binding domain	Interproscan
IPR001789	Domain	Signal transduction response regulator, receiver domain	Interproscan
IPR039420	Family	Transcriptional regulatory protein WalR-like	Interproscan
IPR006291	Family	Transcriptional regulatory protein CusR-like, heavy metal response	Interproscan
IPR011006	Homologous_superfamily	CheY-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48111	REGULATOR OF RPOS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000160	Biological Process	phosphorelay signal transduction system	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000156	Molecular Function	phosphorelay response regulator activity	Interproscan
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0032993	Cellular Component	protein-DNA complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07665	cusR, copR, silR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR	-	Antimicrobial resistance genes	ko01504	deepkoala