Gene detail

Detailed information of HOLI00001.G53046 in Hydra oligactis

Genomic Location: HOLI00001:5138981...5139721
NR annotation: WP_042121420.1, two-component system response regulator OmpR [Pseudomonas japonica]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P0AA18	DNA-binding dual transcriptional regulator OmpR OS=Escherichia coli O157:H7 OX=83334 GN=ompR PE=3 SV=1
P0AA17	DNA-binding dual transcriptional regulator OmpR OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=ompR PE=3 SV=1
P0AA16	DNA-binding dual transcriptional regulator OmpR OS=Escherichia coli (strain K12) OX=83333 GN=ompR PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00486	Trans_reg_C	Transcriptional regulatory protein, C terminal	Domain	Interproscan
PF00072	Response_reg	Response regulator receiver domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001867	Domain	OmpR/PhoB-type DNA-binding domain	Interproscan
IPR039420	Family	Transcriptional regulatory protein WalR-like	Interproscan
IPR016032	Homologous_superfamily	Signal transduction response regulator, C-terminal effector	Interproscan
IPR001789	Domain	Signal transduction response regulator, receiver domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR011006	Homologous_superfamily	CheY-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48111	REGULATOR OF RPOS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000160	Biological Process	phosphorelay signal transduction system	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000156	Molecular Function	phosphorelay response regulator activity	Interproscan
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0032993	Cellular Component	protein-DNA complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07659	ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR	-	Two-component system	ko02022	deepkoala