Detailed information of HOLI00001.G53047 in Hydra oligactis

Genomic Location: HOLI00001:5139873...5142281
NR annotation: WP_175652932.1, Tex family protein [Pseudomonas sp. Marseille-P9899]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P46837Protein YhgF OS=Escherichia coli (strain K12) OX=83333 GN=yhgF PE=1 SV=3
Q45388Protein tex OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=tex PE=4 SV=2
P71353Uncharacterized protein HI_0568 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=HI_0568 PE=4 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09371Tex_NTex-like protein N-terminal domainDomainInterproscan
PF17674HHH_9HHH domainDomainInterproscan
PF12836HHH_3Helix-hairpin-helix motifDomainInterproscan
PF16921Tex_YqgFTex protein YqgF-like domainDomainInterproscan
PF00575S1S1 RNA binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR018974DomainTex-like protein, N-terminalInterproscan
IPR041692DomainHHH domain 9Interproscan
IPR023319Homologous_superfamilyTex-like protein, HTH domain superfamilyInterproscan
IPR037027Homologous_superfamilyYqgF/RNase H-like domain superfamilyInterproscan
IPR003029DomainS1 domainInterproscan
IPR010994Homologous_superfamilyRuvA domain 2-likeInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR044146DomainTex, S1 domainInterproscan
IPR023323Homologous_superfamilyTex-like domain superfamilyInterproscan
IPR050437FamilyBacterial ribosomal protein bS1Interproscan
IPR006641DomainYqgF/RNase H-like domainInterproscan
IPR032639DomainTex protein, YqgF-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR1072430S RIBOSOMAL PROTEIN S1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006139Biological Processnucleobase-containing compound metabolic processInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006412Biological ProcesstranslationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06959tex; protein Tex-Transcription-deepkoala

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