Gene detail

Detailed information of HOLI00001.G53074 in Hydra oligactis

Genomic Location: HOLI00001:5174386...5175470
NR annotation: WP_175652957.1, sensor domain-containing diguanylate cyclase [Pseudomonas sp. Marseille-P9899]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
A0A0H3AFM6	Diguanylate cyclase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) OX=345073 GN=VC0395_0300 PE=1 SV=1
Q73RG3	Diguanylate cyclase A OS=Treponema denticola (strain ATCC 35405 / DSM 14222 / CIP 103919 / JCM 8153 / KCTC 15104) OX=243275 GN=dgcA PE=1 SV=1
P55552	Uncharacterized protein y4lL OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=NGR_a02630 PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00990	GGDEF	Diguanylate cyclase, GGDEF domain	Domain	Interproscan
PF08447	PAS_3	PAS fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029787	Homologous_superfamily	Nucleotide cyclase	Interproscan
IPR000160	Domain	GGDEF domain	Interproscan
IPR000014	Domain	PAS domain	Interproscan
IPR001610	Repeat	PAC motif	Interproscan
IPR035965	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR052163	Family	Diguanylate Cyclase/Regulatory Protein	Interproscan
IPR013655	Domain	PAS fold-3	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000700	Domain	PAS-associated, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46663	DIGUANYLATE CYCLASE DGCT-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan