Gene detail

Detailed information of HOLI00001.G53283 in Hydra oligactis

Genomic Location: HOLI00001:5424190...5425527
NR annotation: WP_256587745.1, MULTISPECIES: ATP-dependent RNA helicase DbpA [unclassified Pseudomonas]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P21693	ATP-dependent RNA helicase DbpA OS=Escherichia coli (strain K12) OX=83333 GN=dbpA PE=1 SV=2
P96614	DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus subtilis (strain 168) OX=224308 GN=cshA PE=1 SV=2
Q73EU1	DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain ATCC 10987 / NRS 248) OX=222523 GN=cshA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03880	DbpA	DbpA RNA binding domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR005580	Domain	DEAD box helicase DbpA/CsdA, RNA-binding domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0000027	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05591	dbpA; ATP-dependent RNA helicase DbpA	EC:5.6.2.6	Ribosome biogenesis	ko03009	deepkoala