Gene detail

Detailed information of HOLI00001.G53301 in Hydra oligactis

Genomic Location: HOLI00001:5449730...5451532
NR annotation: WP_175653917.1, lipid A export permease/ATP-binding protein MsbA [Pseudomonas sp. Marseille-P9899]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q88D92	ATP-dependent lipid A-core flippase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=msbA PE=3 SV=1
Q87VF3	ATP-dependent lipid A-core flippase OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=msbA PE=3 SV=2
Q48P40	ATP-dependent lipid A-core flippase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=msbA PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00664	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan
PF00005	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR011917	Family	ABC transporter, lipid A-core flippase, MsbA	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR011527	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR036640	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039421	Family	Type 1 protein exporter	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24221	ATP-BINDING CASSETTE SUB-FAMILY B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0034040	Molecular Function	ATPase-coupled lipid transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11085	msbA; ATP-binding cassette, subfamily B, bacterial MsbA	EC:7.5.2.6	Transporters	ko02000	deepkoala