Gene detail

Detailed information of HOLI00001.G53338 in Hydra oligactis

Genomic Location: HOLI00001:5493522...5494889
NR annotation: KAF1855772.1, hypothetical protein Lal_00000712 [Lupinus albus]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P25519	GTPase HflX OS=Escherichia coli (strain K12) OX=83333 GN=hflX PE=1 SV=3
Q0I442	GTPase HflX OS=Histophilus somni (strain 129Pt) OX=205914 GN=hflX PE=3 SV=1
A0L4B2	GTPase HflX OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) OX=156889 GN=hflX PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17209	Hfq	Hfq protein	Domain	Interproscan
PF13167	GTP-bdg_N	GTP-binding GTPase N-terminal	Family	Interproscan
PF01926	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF16360	GTP-bdg_M	GTP-binding GTPase Middle Region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030394	Domain	HflX-type guanine nucleotide-binding (G) domain	Interproscan
IPR016496	Family	GTPase HflX	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005001	Family	RNA-binding protein Hfq	Interproscan
IPR010920	Homologous_superfamily	LSM domain superfamily	Interproscan
IPR025121	Domain	GTPase HflX, N-terminal	Interproscan
IPR047575	Domain	Sm domain	Interproscan
IPR006073	Domain	GTP binding domain	Interproscan
IPR042108	Homologous_superfamily	GTPase HflX, N-terminal domain superfamily	Interproscan
IPR032305	Domain	GTP-binding protein, middle domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10229	GTP-BINDING PROTEIN HFLX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03665	hflX; GTPase	-	Ribosome biogenesis	ko03009	deepkoala