Gene detail

Detailed information of HOLI00001.G53404 in Hydra oligactis

Genomic Location: HOLI00001:5576620...5577949
NR annotation: WP_095156033.1, MULTISPECIES: tRNA dihydrouridine synthase DusB [Pseudomonas]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q88DK5	tRNA-dihydrouridine synthase B OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=dusB PE=3 SV=1
Q87VS1	tRNA-dihydrouridine synthase B OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=dusB PE=3 SV=1
Q9HUW1	tRNA-dihydrouridine synthase B OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=dusB PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01207	Dus	Dihydrouridine synthase (Dus)	Family	Interproscan
PF02954	HTH_8	Bacterial regulatory protein, Fis family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002197	Domain	DNA binding HTH domain, Fis-type	Interproscan
IPR032887	Family	tRNA-dihydrouridine synthase B	Interproscan
IPR035587	Domain	DUS-like, FMN-binding domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR024036	Homologous_superfamily	tRNA-dihydrouridine synthase, putative, C-terminal	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR005412	Family	DNA-binding protein Fis	Interproscan
IPR004652	Family	tRNA-dihydrouridine synthase DusB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45846	TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0002943	Biological Process	tRNA dihydrouridine synthesis	Interproscan
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0008033	Biological Process	tRNA processing	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05540	dusB; tRNA-dihydrouridine synthase B	EC:1.-.-.-	Transfer RNA biogenesis	ko03016	deepkoala