Gene detail

Detailed information of HOLI00001.G53541 in Hydra oligactis

Genomic Location: HOLI00001:5767254...5767979
NR annotation: WP_110970952.1, MULTISPECIES: response regulator transcription factor [Pseudomonas]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q04803	Transcriptional activator protein PfeR OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=pfeR PE=3 SV=1
P0AE89	Transcriptional regulatory protein CpxR OS=Escherichia coli O157:H7 OX=83334 GN=cpxR PE=3 SV=1
P0AE88	Transcriptional regulatory protein CpxR OS=Escherichia coli (strain K12) OX=83333 GN=cpxR PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00072	Response_reg	Response regulator receiver domain	Domain	Interproscan
PF00486	Trans_reg_C	Transcriptional regulatory protein, C terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039420	Family	Transcriptional regulatory protein WalR-like	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR001789	Domain	Signal transduction response regulator, receiver domain	Interproscan
IPR001867	Domain	OmpR/PhoB-type DNA-binding domain	Interproscan
IPR016032	Homologous_superfamily	Signal transduction response regulator, C-terminal effector	Interproscan
IPR011006	Homologous_superfamily	CheY-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48111	REGULATOR OF RPOS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000156	Molecular Function	phosphorelay response regulator activity	Interproscan
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0032993	Cellular Component	protein-DNA complex	Interproscan
GO:0000160	Biological Process	phosphorelay signal transduction system	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19610	pfeR, pirR; two-component system, OmpR family, response regulator PfeR	-	Two-component system	ko02022	deepkoala