Gene detail

Detailed information of HOLI00001.G53591 in Hydra oligactis

Genomic Location: HOLI00001:5833797...5837019
NR annotation: GEV33777.1, peptide chain release factor APG3, chloroplastic [Tanacetum cinerariifolium]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00001.g53591.t1

ATGGCTGGCGAAGAAGTCCGCGATACCCGTGAGCAGTTGCAGGAACTGGAAGTCCAGTTGCAGCGCATGCTGCTGCCCAAGGACCCCAACGACGGCCGCAACGTGTTCCTCGAAATCCGTGCCGGTACTGGCGGCGACGAGGCGGCGATCTTCTCCGGCGACCTGTTCCGCATGTATTCGCGCTACGCCGAACGGCGTGGCTGGCGCCTGGAGATCCTCTCGGAAAACGAGGGCGAGCACGGCGGCTACAAGGAAATCATCGCCCGCGTCGAGGGCGACAGCGTCTACGGCAAGCTCAAGTTCGAGTCCGGCGCGCACCGCGTGCAGCGCGTTCCCGAAACCGAATCCCAGGGCCGCATCCATACTTCGGCCTGTACCGTCGCCGTCCTGCCGGAGCCGGACGAGCAGGTCGCCATCGAGATCAACCCCGCCGATCTGCGGGTCGATACCTACCGCGCGTCCGGCGCGGGCGGTCAGCACATCAACAAGACCGACTCGGCGATCCGCATCACCCACTTGCCCACCGGTATCGTGGTCGAATGCCAGGAAGAGCGTTCGCAGCACAAGAACCGCGCACGGGCGATGTCCTGGCTGTCGGCCAAGCTCAACGACATCCAGACCAGCGCCGCGCAGAACGCCATGGCCAGCGAGCGCAAGCTGCTGGTCGGCTCGGGCGACCGTTCCGAGCGAATCCGTACCTACAACTATCCACAGGGACGGGTGACCGATCACCGCATCAACCTGACCCTCCTGCTGCGTGGCGCCGAGTTGCCTGACTCGCCGACCGCGCGCCTGGACATCGAATTGCTGCTGGCTGCGGCCATCGGCAAGTCCCGCAGTTACCTGCACACCTGGCCTGAACGCATCGTCAGCAGCGAAGCGGCGCAGACGTTCGCCAGCTACCTGCAACGTCGCCGTGCCGGCGAACCGGTGGCCTACATCCTTGGCCAGCAGGGGTTCTGGAACCTCGACCTGGATGTCGCACCGCACACTTTGATCCCCCGTCCTGAAACCGAACTGCTGGTGGAAGCCGCCCTGGCGCTGCTGCCGGCCGAGCCTGCCCGTGTGCTCGACCTCGGCACCGGCACCGGCGCCATTGCCCTGGCCCTGGCCAGCGAGCGCCGGAACTGGAGCGTGGTGGCGGTGGACCGTGTGCTGGAAGCCGTAGCCCTGGCCGAAAGCAACCGCCAGCGCCTGCAACTGGACAACGTCACGGTACTCAACAGCCATTGGTTCAGTGCCCTGGCCGGGCAGCGCTTCGAACTGATCGTCAGCAACCCGCCTTACATTGCCGCCGAAGACCCGCACCTGATTGCCGGTGACGTGCGCTTCGAGCCCAGCAGTGCGCTGGTGGCCGGTGCCGATGGCCTCGACGATCTGCGCCAGATCATCGCCCAGGCTCCGCAATACCTGGTCGCGGGTGGCTGGCTGCTGCTGGAGCACGGTTACGATCAGGCGGCAGCGCCTGGGGCGCCTGCCGTGCTGACCGATGAAGAACTGCTGCGCTACAGCCGGCAGATCCTGCTGGCGCAGGTCGATATCGACGGCCAGTTGCGCCTCAAGCAGAGCAAGGCGCTGATCGTCGGGCTGGGCGGGCTGGGTTCGCCGGTGGCGTTGTACCTGGCCGCCGCCGGGGTTGGCAGCCTGCATCTGGCCGACTTCGACACGGTCGACCTGACCAACCTGCAACGCCAGATCATCCATGACGGCAACTCGGTCGGTCAGCTCAAGGTCGACTCGGCGTTGGCCAGGCTGCGGGCGATCAACCCGGATATCAGCCTGGTGCCATATCGTCAGGCGCTGGATGAGGACTCGCTGGCCGAAGCGGTCGGCGCGGTGGATCTGGTGCTCGATTGCTCGGACAATTTTTCAACCCGCGAGGCGGTCAACGCCGCCTGCGTCAAGGCCGGCAAGCCGCTGGTGAGCGGCGCGGCGATTCGCCTGGAAGGGCAGTTGTCGGTGTTCGACCCGCGTCAGCCGCAGAGCCCGTGCTACCACTGCCTGTACGGGCATGGCAGCGATGCCGAGCTGACCTGCAGCGAGGCCGGTGTCGTCGGGCCGCTGGTGGGGCTGGTGGGCAGTCTGCAGGCACTCGAAGCCTTGAAGCTGCTGGCCGGATTCGGCGAGCCGCTGGTGGGTAGGCTGCTGCTGATCGATGCGCTGGGCACGCGTTTTCGCGAGCTGCGGGGCGTCTTCGATTCCGGCGTCGGCGGTCTGTCGGTACTGGCGGAAATCACCCGTCTGCTGCCTGGCGAGTCACTGCTGTACGTGGCGGACTGCGGGCATATCCCCTACGGCGAAAAATCTCCCGAATTCATCCGCCAGCGTTGCCGGGCCGTTGCCGAGTTCTTCCAGGAGCAGGGTGCCAAGGCGGTGGTGCTGGCGTGCAATACCGCTACCGTGGCAGCGGCTGCCGACCTGCGTGAGCGTTTTCCGCAGTGGCCGCTGGTGGGCATGGAGCCGGCGGTCAAGCCGGCCGCAGCGGCGACCCGCAGTGGTGTGGTCGGTGTCCTCGCCACCACCGGAACCCTGCAGAGCGCCAAGTTCGCGGCCTTGCTCGACCGCTTCGCCACCGATGTGCGGGTGGTGACGCAGCCCTGCCCGGGGCTAGTGGAACTGATCGAGTCCGGCGACCTCGACAGCCCCGCGCTGCGTCAGCTACTGCAAGGTTATGTCGCGCCGCTGCTGGCGGCGGGCTGCGACACCATCATTCTCGGCTGCACCCATTACCCCTTTCTCAAGCCGCTGCTGGGCCAGATGGTGCCGGCGTCGGTCGCCATCATCGATACCGGCGCCGCCGTGGCCCGGCAACTGCAGCGCTTGCTGCACGAGCGCAACCTGCTGGCCCGCGGCCCCGCGCGGCCGACGCAGTTCTGGACCAGTGGCGATCCGCAACATTTGCAAAACATCCTGCCTTTGCTGTGGCATAAATCCGACTCTGTGCAAAGCTTTCCCAGGTAA

Transcript

HOLI00001.g53591.t1

Protein

Uniprot

Uniprot term	Description
B1JEP6	Peptide chain release factor 1 OS=Pseudomonas putida (strain W619) OX=390235 GN=prfA PE=3 SV=1
Q1IEX1	Peptide chain release factor 1 OS=Pseudomonas entomophila (strain L48) OX=384676 GN=prfA PE=3 SV=1
Q88PW5	Peptide chain release factor 1 OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=prfA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03462	PCRF	PCRF domain	Domain	Interproscan
PF00472	RF-1	RF-1 domain	Family	Interproscan
PF17827	PrmC_N	PrmC N-terminal domain	Domain	Interproscan
PF01177	Asp_Glu_race	Asp/Glu/Hydantoin racemase	Family	Interproscan
PF05175	MTS	Methyltransferase small domain	Domain	Interproscan
PF00899	ThiF	ThiF family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001920	Homologous_superfamily	Asp/Glu racemase	Interproscan
IPR005139	Domain	Peptide chain release factor	Interproscan
IPR045853	Homologous_superfamily	Peptide chain release factor class I superfamily	Interproscan
IPR000352	Domain	Peptide chain release factor class I	Interproscan
IPR004391	Family	Glutamate racemase	Interproscan
IPR004373	Family	Peptide chain release factor 1	Interproscan
IPR019874	Family	Protein-(glutamine-N5) methyltransferase, release factor-specific	Interproscan
IPR040758	Domain	Release factor glutamine methyltransferase, N-terminal domain	Interproscan
IPR015942	Family	Asp/Glu/hydantoin racemase	Interproscan
IPR007848	Domain	Methyltransferase small domain	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR004556	Family	Methyltransferase HemK-like	Interproscan
IPR035985	Homologous_superfamily	Ubiquitin-activating enzyme	Interproscan
IPR033134	Active_site	Asp/Glu racemase, active site 2	Interproscan
IPR002052	Conserved_site	DNA methylase, N-6 adenine-specific, conserved site	Interproscan
IPR018187	Active_site	Asp/Glu racemase, active site 1	Interproscan
IPR000594	Domain	THIF-type NAD/FAD binding fold	Interproscan
IPR050057	Family	Prokaryotic/Mitochondrial Release Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43804	LD18447P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016855	Molecular Function	racemase and epimerase activity, acting on amino acids and derivatives	Interproscan
GO:0006415	Biological Process	translational termination	Interproscan
GO:0003747	Molecular Function	translation release factor activity	Interproscan
GO:0008881	Molecular Function	glutamate racemase activity	Interproscan
GO:0016149	Molecular Function	translation release factor activity, codon specific	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0006807	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0036361	Molecular Function	racemase activity, acting on amino acids and derivatives	Interproscan
GO:0006479	Biological Process	protein methylation	Interproscan
GO:0008276	Molecular Function	protein methyltransferase activity	Interproscan
GO:0008641	Molecular Function	ubiquitin-like modifier activating enzyme activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0032259	Biological Process	methylation	Interproscan