Gene detail

Detailed information of HOLI00001.G53764 in Hydra oligactis

Genomic Location: HOLI00001:6072991...6074382
NR annotation: KPY32538.1, Ornithine decarboxylase [Pseudomonas syringae pv. primulae]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P27121	Ornithine decarboxylase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=spe-1 PE=2 SV=1
Q5HG20	Diaminopimelate decarboxylase OS=Staphylococcus aureus (strain COL) OX=93062 GN=lysA PE=3 SV=1
Q9ZME5	Diaminopimelate decarboxylase OS=Helicobacter pylori (strain J99 / ATCC 700824) OX=85963 GN=lysA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02784	Orn_Arg_deC_N	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	Domain	Interproscan
PF00278	Orn_DAP_Arg_deC	Pyridoxal-dependent decarboxylase, C-terminal sheet domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009006	Homologous_superfamily	Alanine racemase/group IV decarboxylase, C-terminal	Interproscan
IPR002433	Family	Ornithine decarboxylase	Interproscan
IPR029066	Homologous_superfamily	PLP-binding barrel	Interproscan
IPR022657	Conserved_site	Orn/DAP/Arg decarboxylase 2, conserved site	Interproscan
IPR022653	Binding_site	Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site	Interproscan
IPR022644	Domain	Orn/DAP/Arg decarboxylase 2, N-terminal	Interproscan
IPR000183	Family	Ornithine/DAP/Arg decarboxylase	Interproscan
IPR022643	Domain	Orn/DAP/Arg decarboxylase 2, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11482	ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0006596	Biological Process	polyamine biosynthetic process	Interproscan
GO:0004586	Molecular Function	ornithine decarboxylase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0033387	Biological Process	putrescine biosynthetic process from ornithine	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01581	E4.1.1.17, ODC1, speC, speF; ornithine decarboxylase	EC:4.1.1.17	Efferocytosis	ko04148	deepkoala