Gene detail

Detailed information of HOLI00001.G53828 in Hydra oligactis

Genomic Location: HOLI00001:6152980...6153936
NR annotation: WP_262128683.1, 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF [Pseudomonas sp. 5P_5.1_Bac1]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
A5VZ65	Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1) OX=351746 GN=rlmF PE=3 SV=1
Q88P77	Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=rlmF PE=3 SV=1
B0KQK4	Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas putida (strain GB-1) OX=76869 GN=rlmF PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05971	Methyltransf_10	RNA methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016909	Family	Ribosomal RNA large subunit methyltransferase F	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR010286	Family	METTL16/RlmF family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13393	SAM-DEPENDENT METHYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0008988	Molecular Function	rRNA (adenine-N6-)-methyltransferase activity	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0052907	Molecular Function	23S rRNA (adenine(1618)-N(6))-methyltransferase activity	Interproscan
GO:0070475	Biological Process	rRNA base methylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06970	rlmF; 23S rRNA (adenine1618-N6)-methyltransferase	EC:2.1.1.181	Ribosome biogenesis	ko03009	deepkoala