Gene detail

Detailed information of HOLI00001.G53835 in Hydra oligactis

Genomic Location: HOLI00001:6162726...6162938
NR annotation: WP_007977299.1, MULTISPECIES: cold-shock protein [Pseudomonas]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
P72192	Temperature acclimation protein B (Fragment) OS=Pseudomonas fragi OX=296 GN=tapB PE=2 SV=1
P72191	Temperature acclimation protein A (Fragment) OS=Pseudomonas fragi OX=296 GN=tapA PE=2 SV=1
P0A106	Cold shock protein CapB OS=Pseudomonas fragi OX=296 GN=capB PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	CSD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050181	Family	Cold shock domain-containing protein	Interproscan
IPR012156	Family	Cold shock, CspA	Interproscan
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR019844	Domain	Cold-shock (CSD) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11544	COLD SHOCK DOMAIN CONTAINING PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03704	cspA; cold shock protein	-	Transcription	-	deepkoala