Gene detail

Detailed information of HOLI00002.G18389 in Hydra oligactis

Genomic Location: HOLI00002:1272835...1273791
NR annotation: MBA4241892.1, ATP-dependent RNA helicase [Sphingobacteriaceae bacterium]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q73EU1	DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain ATCC 10987 / NRS 248) OX=222523 GN=cshA PE=3 SV=1
A0R8U6	DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis (strain Al Hakam) OX=412694 GN=cshA PE=3 SV=1
Q81VG0	DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus anthracis OX=1392 GN=cshA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03880	DbpA	DbpA RNA binding domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR005580	Domain	DEAD box helicase DbpA/CsdA, RNA-binding domain	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000027	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan