Gene detail

Detailed information of HOLI00002.G18441 in Hydra oligactis

Genomic Location: HOLI00002:1334266...1335015
NR annotation: MBI3519160.1, oxygen-independent coproporphyrinogen III oxidase [Bacteroidota bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
O67886	Oxygen-independent coproporphyrinogen III oxidase OS=Aquifex aeolicus (strain VF5) OX=224324 GN=hemN PE=3 SV=1
O34162	Oxygen-independent coproporphyrinogen III oxidase OS=Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) OX=381666 GN=hemN PE=2 SV=2
P74132	Oxygen-independent coproporphyrinogen III oxidase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=hemN PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006638	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR034505	Family	Anaerobic coproporphyrinogen-III oxidase	Interproscan
IPR007197	Domain	Radical SAM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13932	COPROPORPHYRINIGEN III OXIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006779	Biological Process	porphyrin-containing compound biosynthetic process	Interproscan
GO:0006782	Biological Process	protoporphyrinogen IX biosynthetic process	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0051989	Molecular Function	coproporphyrinogen dehydrogenase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04069	pflA, pflC, pflE; pyruvate formate lyase activating enzyme	EC:1.97.1.4	Enzymes with EC numbers	-	deepkoala