Gene detail

Detailed information of HOLI00002.G18634 in Hydra oligactis

Genomic Location: HOLI00002:1580456...1581571
NR annotation: MBA4240265.1, carbamoyl phosphate synthase small subunit [Sphingobacteriaceae bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q31LB7	Carbamoyl phosphate synthase small chain OS=Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805) OX=1140 GN=carA PE=3 SV=1
Q5N0L0	Carbamoyl phosphate synthase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=carA PE=3 SV=1
Q8KGA2	Carbamoyl phosphate synthase small chain OS=Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) OX=194439 GN=carA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00988	CPSase_sm_chain	Carbamoyl-phosphate synthase small chain, CPSase domain	Domain	Interproscan
PF00117	GATase	Glutamine amidotransferase class-I	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029062	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR036480	Homologous_superfamily	Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily	Interproscan
IPR002474	Domain	Carbamoyl-phosphate synthase small subunit, N-terminal domain	Interproscan
IPR006274	Family	Carbamoyl-phosphate synthase, small subunit	Interproscan
IPR017926	Domain	Glutamine amidotransferase	Interproscan
IPR035686	Domain	Carbamoyl-phosphate synthase small subunit, GATase1 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11405	CARBAMOYLTRANSFERASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004088	Molecular Function	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	Interproscan
GO:0006207	Biological Process	'de novo' pyrimidine nucleobase biosynthetic process	Interproscan
GO:0006541	Biological Process	glutamine metabolic process	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005951	Cellular Component	carbamoyl-phosphate synthase complex	Interproscan
GO:0006526	Biological Process	L-arginine biosynthetic process	Interproscan
GO:0006807	Biological Process	obsolete nitrogen compound metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01956	carA, CPA1; carbamoyl-phosphate synthase small subunit	EC:6.3.5.5	Alanine, aspartate and glutamate metabolism	ko00250	deepkoala