Detailed information of HOLI00002.G19387 in Hydra oligactis

Genomic Location: HOLI00002:2509024...2511121
NR annotation: MBL7937108.1, polyribonucleotide nucleotidyltransferase [Bacteroidia bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5L7Z7Polyribonucleotide nucleotidyltransferase OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / LMG 10263 / NCTC 9343 / Onslow / VPI 2553 / EN-2) OX=272559 GN=pnp PE=3 SV=1
Q64N73Polyribonucleotide nucleotidyltransferase OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=pnp PE=3 SV=1
Q8A4N6Polyribonucleotide nucleotidyltransferase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=pnp PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01138RNase_PH3' exoribonuclease family, domain 1DomainInterproscan
PF03725RNase_PH_C3' exoribonuclease family, domain 2DomainInterproscan
PF03726PNPasePolyribonucleotide nucleotidyltransferase, RNA binding domainDomainInterproscan
PF00575S1S1 RNA binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001247DomainExoribonuclease, phosphorolytic domain 1Interproscan
IPR012162FamilyPolyribonucleotide nucleotidyltransferaseInterproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR015847DomainExoribonuclease, phosphorolytic domain 2Interproscan
IPR015848DomainPolyribonucleotide nucleotidyltransferase, RNA-binding domainInterproscan
IPR027408Homologous_superfamilyPNPase/RNase PH domain superfamilyInterproscan
IPR003029DomainS1 domainInterproscan
IPR036345Homologous_superfamilyExoribonuclease, PH domain 2 superfamilyInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11252POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004654Molecular Functionpolyribonucleotide nucleotidyltransferase activityInterproscan
GO:0006402Biological ProcessmRNA catabolic processInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0000175Molecular Function3'-5'-RNA exonuclease activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006401Biological ProcessRNA catabolic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K00962pnp, PNPT1; polyribonucleotide nucleotidyltransferaseEC:2.7.7.8
Transfer RNA biogenesisko03016deepkoala

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