Gene detail

Detailed information of HOLI00002.G19866 in Hydra oligactis

Genomic Location: HOLI00002:3078419...3080826
NR annotation: PBQ31071.1, 3-hydroxyacyl-CoA dehydrogenase [Sphingobacteriaceae bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00002.g19866.t1

ATGAAAAGACTGATTCAAAAAATTGCTGTACTTGGCTCAGGTGTTATGGGCAGCCGTATTGCCTGCCACTTTGCCAACATTGGCTGTGAAGTATTGTTACTCGACATTCTTCCGAAGGAGCTCAATGACGCCGAAAAAGCGAAGGGACTGACGATGGAAAACAAAGCCGTGAGAAACCGCATCGTCAATGATGCGCTGGCTTTCGCACTAAAGTCGAATCCTTCACCCATTTATAAAAAGGAATTTGCCAGGCGAATCACTACCGGCAACTTTGAAGACGATATGGCTAAGATTGCTAACTACGACTGGACCATCGAAGTCGTGGTTGAGAATTTAGACATCAAGAAAAAAGTATACGAGCAGGTGGAGAAATTCCGGAAGCCCGGAACCCTGATCACCTCTAATACCTCGGGCATTCCTATCCATCTGTTAACGGAAGGAAGAAGCGAGGACTTCAAAGACCATTTCTGCGGCACGCACTTCTTCAACCCTCCGCGTTATTTAAAGTTATTAGAGATCATCCCTACGCCACACACCAAAGCAGAGATCGTTTCCTTCCTGATGGAATACGGTGAAAAGTTTTTAGGAAAGACAACCGTACTCGCTAAAGACACGCCGGCCTTTATTGCCAACCGCGTGGGCGTTTACGGCATTATGTCCTTACTGCACCTGGTAGAGAAAATGGAGTTGACGGTAGAGGAAGTCGATAAATTAACCGGCCCTGTGTTAGGACGTCCGAAATCGGCTACCTTCCGCACAGCCGATGTGGTTGGCCTGGATACCCTGGTAAACGTGGCCAATGGCTTAAAACAAGGTGTTCCTAACGACGAGGCCAATGCCTTATTTACACTTCCGGATTACCTGAAAAAAATGGTGGAAAACAAATGGCTGGGTGACAAAACCGGCCAGGGCTTTTACAAGAAGGTAAAAGGCAAGGACGGCAAATCGGAGATCCTGGCGCTTGACCTAAAAACACTGGAATACCGTCCGCAGCAAAAAGCGAAGTTCGCGACGCTTGAAATGACGAAACCGGTAGAGAATTTAAAAGACCGCTTAAAAATGCTGGTAGCCGGAAAAGACAAAGCCGGAGAATTTTACCGCGCCACTTTCGCCGGCTTATTTCAATATGTATCGAACCGCATTCCGGAAATTGCAGACGAACTTTATAAAATCGACGATGCGCTGAAAGCCGGATTCGGCTGGGATCTCGGACCATTTGAATACTGGGATGCCATCGGTGTGAAAGCATCGGTGGAATTGATGGAAGCTGCCGGTGTGAAACCGAATACCTGGGTCTACGATTTCCTGAAAGCCGGGAACACAGCCTTCTACAAAATAGAGAACGGTAAAAAATTATTTTACGATATTCCTTCCAAATCCTATAAAACCATTCCGGGAACGGAAGAGTTCATTTCTTTGGAAGCCCTGCGCGGCACAAACACCATCTGGAAAAACAGCGGTGTGTCTATCATCGACTTAGGGGATGGCATCCTCAACGTGGAGTTCCATACCAAGATGAACACCATCGGCGGTGAAGTGCTGGCGGGCCTGAACAAAGCCATCGACATTGCCGAGAAAGATTATAAAGGATTAGTGATCAGTAATGAAGGAGCCAATTTCTCGGCAGGTGCCAATGTGGGCATGATCTTTATGATGGCTGCCGAACAGGAGTGGGACGAGCTCAACATGGCGGTGCGCATGTTCCAGAACACAACCATGCGGATGCGTTATTCGTCTATCCCTGTGCTATATCGGCCTGGTGGAATTGGTGTGGGTGTGATTCCCGGCGGTGGCGGCACCAAAGAGTTTGCCGTACGCCTCTCCGACTCCCTGCACGAAGGCGATGTGGAGCTGAATATCTTCCGTGAAAAATTCCTGACCATCGGCCAGGCCAAAGTATCGACCTCTGCTTATGAAGCCTTTGACCTGGGGATCTTAAGAAAAGGGATCGACAAGGTGGTGATCTCACGCGCCCGCCAGCTGGCAGAGGCCAAAGCAGAATGCCTTTTACTCGCGGAGGCAGGCTACACCAAACCGGCGCCACGCAAGGACATCCGGGTACTTGGCAACCAGGCCCTGGGCTTAGTGTATGTTGGCGCAAACTCCATGTACAGTGGAAACTATATGAGCGAGCACGATCTTAAGATCTCCCAGAAATTAGGCTACGTGATTGCCGGCGGAGATTTATCGCAACCGACACTCGTTAGTGAACAATACCTGCTGGATTTAGAAAGAGAAGCCTTCGTACAACTCTGTACCGAGAAAAAAAAAACCATGGAGCGATTACACAGCATCATTAATGGAGGGAAAGTGTTGAGGAACTAA

Transcript

HOLI00002.g19866.t1

Protein

Uniprot

Uniprot term	Description
O32178	Probable 3-hydroxyacyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) OX=224308 GN=fadN PE=2 SV=2
P83589	Probable 3-hydroxyacyl-CoA dehydrogenase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1) OX=243230 GN=DR_2477 PE=1 SV=2
Q4UL32	Putative fatty acid oxidation complex trifunctional enzyme OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=RF_0890 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00725	3HCDH	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF02737	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR006108	Domain	3-hydroxyacyl-CoA dehydrogenase, C-terminal	Interproscan
IPR008927	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR029045	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR006176	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48075	3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0070403	Molecular Function	NAD+ binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07516	fadN; 3-hydroxyacyl-CoA dehydrogenase	EC:1.1.1.35	Benzoate degradation	ko00362	deepkoala