Detailed information of HOLI00002.G20128 in Hydra oligactis

Genomic Location: HOLI00002:3393890...3395299
NR annotation: MBP8033462.1, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Bacteroidia bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8AA22Uncharacterized RNA methyltransferase BT_0643 OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=BT_0643 PE=3 SV=1
Q7MVG9Uncharacterized RNA methyltransferase PG_1095 OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) OX=242619 GN=PG_1095 PE=3 SV=1
Q8KGF9Uncharacterized RNA methyltransferase CT0009 OS=Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) OX=194439 GN=CT0009 PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05958tRNA_U5-meth_trtRNA (Uracil-5-)-methyltransferaseFamilyInterproscan
PF01938TRAMTRAM domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR010280Family(Uracil-5)-methyltransferase familyInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR030390Active_siteRNA methyltransferase TrmA, active siteInterproscan
IPR030391Conserved_siteRNA methyltransferase TrmA, conserved siteInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR002792DomainTRAM domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11061RNA M5U METHYLTRANSFERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006396Biological ProcessRNA processingInterproscan
GO:0008173Molecular FunctionRNA methyltransferase activityInterproscan
GO:0070041Molecular FunctionrRNA (uridine-C5-)-methyltransferase activityInterproscan
GO:0070475Biological ProcessrRNA base methylationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03215rumA; 23S rRNA (uracil1939-C5)-methyltransferaseEC:2.1.1.190
Ribosome biogenesisko03009deepkoala

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