Gene detail

Detailed information of HOLI00002.G20170 in Hydra oligactis

Genomic Location: HOLI00002:3466781...3470359
NR annotation: MBA3662767.1, peptide MFS transporter [Bacteroidota bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00002.g20170.t1

ATGAGCACAGGAACAGTAAAATTTTTTAATGAAACAAAAGGATTTGGTTTTATTAAAGAGGATGGATCAGGAAAAGAGTACTTCGTACACGTAACAGGTTTATCTGACAAAATTAAAGAAAACGACACCGTTACTTTCGATATTCAGGAAGGTAAAAAAGGTTTGAACGCCGTAAACGGCGCACTAATTAACACACAGATAACAAACATGGAACAAGCAACAGCTTCAAAAGGACACCCAAAAGGTTTATGGGTATTATTCGGTACTGAAATGTGGGAAAGGTTTAACTTTTATGGGATGAGGGCTATCCTCACCCTGTTTATGGTGAATGCCCTGATGATGAAGGATAGCGATGCGTCCCTGATCTACGGCGGCTTTCTCGGGCTTTGCTACCTCACACCGATGCTGGGAGGCTTTGTAGCCGACCGTTTCCTGGGTAACCGCAATTGTATCATGCTGGGTGGTTCTATGATGGCCATTGGCCAATTCCTGTTATTTACCAGTGCTTCCGTATTCGAAGGAAGCTTAAGCACGGCTACCACGCTTATGTGGCTGGCTTTGTTCATTATCATTTTCGGTAACGGGTTCTTCAAGCCGAATATATCCAGCATGGTAGGCAGCCTCTATCCGAAAGAGGAAAAAAGCAAGCTGGATTCTGCCTTTACGATTTTCTACATGGGCATTAACCTGGGCGCTTTATTCAGCCAGTGGTTGTGCCCATTGATCGGTGACGTGAAAGACGCCGGTGGCGTAAGGGATATCCACGCCTTCAAATGGGGCTTTTTAGCGGCGGGCATCGCTATGGTGATCGGCACAGCGATCTTCTATTTCCTGAAAAACAAATACGTTGTCGCTCCTGATGGAAAAGCATTGGGTGGCGTTCCATCCAAAAACGATGCTTCCCATTTTGAGGAGGGTGAAGCTCAGAAAGCAGTATTTTCTTCTACTGCACTCATTGCAGCCGTAATAGGCTTCATCGCTTTATTCTTCCTGTTCCGCTATATGGCGAACAGTACCAATTTTGTTAAAACCATTATCTATCCGATCATTTATGCGAGCGGTATTACACTGGCTGGCCTCATTATTTCTGACTCTACGCTTACGAAGGTAGAGCGCCAGCGAATCTATGTAATTTATATCATTTCCTTCTTCGTGATCTTTTTCTGGGCAGCTTTCGAGCAGGCCGGTTCGTCCCTGACCTTCATTGCCGACAACCAAACCGACCGCACCTTTTTGTTCGGCTGGAAAATGCCGGCTTCCATGGTACAGATTTTTAATGGCCTTTTTGTGGTGATGCTGGCCTTCCCTTTCAGCTGGCTGTGGGGTAAACTCAACAAGATGGGCAAAGAGCCTATCTCACCAATGAAGCAGGCTATCGGTTTATTACTTATTGCACTGAGTTACTTTATCATTGCCCATAACGTTAAAGACCTTGGCAACAGTGGCCTGCTGGCTATTAAATGGTTAGTGTTACTATATTTCATCCAGACCTGTGGCGAGCTTTGCCTCTCCCCGATCGGTCTGTCGCTGGTAGGAAAGCTATCTCCGAAACGCTTCGCCTCTTTATTATATGGCGTGTTCTTTATTTCCAATGCCGCCGGTTATGCCCTGGCCGGCACACTGGGTGCGGTATTGCCTCCAACCGGTGATAAATACAAAGTAGCCGAAGAAATGGGTATCAACCTGCAGGCTGTGCTTGACAAAACAATAACCGCAACACCGGAGCAATTGGCTATGCTGGATGAGAAACAGATTAGCACCACTTATCCTGAATTTGCGGGCTTCCAAATTCACAATTTCTGCATGAAGACAGAGGCCACCGAAAGCAAAGTCACAGCAGATGCTTCTTTAGAAGCTATTCAGAATTTTAAAGGCAAGTACCCGAAACAGCTCTGGTACCTGTTCTTCAGCGAAATGTGGGAACGCTTTAGTTTCTACGGGATGCGCGGGATGCTGGTGTTCTTCATGATCGACCAGCTCCATTACAATGATGTGGATGCCAATCTGCAATACGGAGCTTCTCAATCATTTGTCTATGCCTTTACCTTTATCGGCGGACTTTTTGCCGATAAGATCCTGGGCTACCGCAAGTCACTCTTCTGGGGCGGGATGCTGATGATCCTGGGAAGTCTGATCCTGGCTATTGATCCGAAGCAGTTCTTCTTTATCGGGATTGGCTTCAACGTGGTAGGTACCGCTTTTTTCAAACCCAACATTTCTTCCATTGTGGGGCGTCTGTACCGCGAGGGCGATCCGAGGACGGATGCCGGCTTTTCCCTGTTCTATGCGGGTGTAAACCTGGGAGCGCTGATCGGGGGCTACCTGTGTGTGGCTATCGGTAAGAGAGCGCTCTTCGACAGCCTTGTACCGCAAGGCATGGAATGGAACGTGGCCTTTGGCCTGGCAGCCATTGTGATGCTCGTGAGCCTCCTCACCTTTGTGAATACACAGAAAAGCCTCGGCAGTATTGGCCATTCGCCTTTAACACACCTTGAGCCTCAAAAACGAAAACTGTATGAGTACCTCACCTTCGGCGGCTCCCTGGTTCTCATTCCTTTTGTGATTGCGATGGTTTCCGAAACGGAATATACCGACTGGTTCATGCGCCTGATTGGTCCGGCCGCCCTGGTATACATGTTCGTGGAGATGCGCCACTACAGCTGGGATGTGAACAAGCGGCTCATTGCCGCGATCCTCTTCATGTTTTTCTCTATTTTCTTCTGGGCCTTTTTCGAGCAAAGCGGCGGCTCGCTCAGCATTTTTGCAGCCAACAACCTCAACAATCACATCCTGGGCATGGAGTTCGACCCTAACGGCACCAACAATGCCGCCAACTCCCTGTTCGTGATCGCCTTTGCCGCCCCGCTTGGCATCTTATGGATCTGGATGAACCGGAAAAAGATCGAGCCCAATACCATTGTTAAATTCGGGCTGGCCTTCCTGTTCCTGGCCGGTGGTTTTTATGTCTTCTATTACACGCGCTTATTTACCGATTCCAATGGCGTTACCTCTCTGGGTGTATTTACCTTCGGCTGGTTTGTCATCACCATTGGCGAGCTGTGTTTGTCGCCGATCGGCATGTCCGTGATGACCAAGCTATCGCCCCTGAAACTGCAGGCGGTGGTGATGGGCATGTGGTTCCTGGCCAGCGCTTACGGACAATATTTCGCCGGGCTTTTGGGGGCCAACATCGCAGAGGCTTCCTCCAACTCCACGAACATGGAGAAACTGATGATTTACACCGAGGGCTATAAACAGCTTGGCTTGTACTCCCTGATCGGAGGTGGAATTATTATCGCCATATCCCCACTCATCAAGAAATTGATGGGTAATGTTAAATAA

Transcript

HOLI00002.g20170.t1

Protein

Uniprot

Gene family

Uniprot term	Description
P94408	Uncharacterized transporter YclF OS=Bacillus subtilis (strain 168) OX=224308 GN=yclF PE=3 SV=2
A0A2R9TD79	Peptide transporter YePEPT OS=Yersinia enterocolitica subsp. palearctica serotype O:3 (strain YE-P4) OX=1329364 GN=YEP4_02370 PE=1 SV=1
A0KMY1	Dipeptide and tripeptide permease B OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) OX=380703 GN=dtpB PE=3 SV=1

Gene family	Subfamily
Transcription Factors Family	CSD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan
PF00854	PTR2	POT family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR005279	Family	Dipeptide/tripeptide permease	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan
IPR018456	Conserved_site	PTR2 family proton/oligopeptide symporter, conserved site	Interproscan
IPR050171	Family	Major Facilitator Superfamily (MFS) Transporters	Interproscan
IPR000109	Family	Proton-dependent oligopeptide transporter family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23517	RESISTANCE PROTEIN MDTM, PUTATIVE-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015833	Biological Process	peptide transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:1904680	Molecular Function	peptide transmembrane transporter activity	Interproscan
GO:0006857	Biological Process	oligopeptide transport	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03305	TC.POT; proton-dependent oligopeptide transporter, POT family	-	Transport	-	deepkoala