Detailed information of HOLI00002.G20478 in Hydra oligactis

Genomic Location: HOLI00002:3829925...3830913
NR annotation: MBS1636523.1, T9SS type A sorting domain-containing protein [Bacteroidota bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O54310Cold shock-like protein OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=csp PE=1 SV=1
P62169Cold shock-like protein CspC OS=Bacillus anthracis OX=1392 GN=cspC PE=3 SV=1
P62170Cold shock-like protein CspC OS=Bacillus cereus OX=1396 GN=cspC PE=4 SV=1
Gene familySubfamily
Transcription Factors FamilyCSD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00313CSD'Cold-shock' DNA-binding domainDomainInterproscan
PF18962Por_Secre_tailSecretion system C-terminal sorting domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002059DomainCold-shock protein, DNA-bindingInterproscan
IPR011129DomainCold shock domainInterproscan
IPR026444DomainSecretion system C-terminal sorting domainInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR050181FamilyCold shock domain-containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11544COLD SHOCK DOMAIN CONTAINING PROTEINSInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan

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