Gene detail

Detailed information of HOLI00002.G20827 in Hydra oligactis

Genomic Location: HOLI00002:4268282...4269646
NR annotation: MBP8033073.1, RNA methyltransferase [Bacteroidia bacterium]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q87PA5	Ribosomal RNA small subunit methyltransferase F OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=rsmF PE=3 SV=1
B5FE06	Ribosomal RNA small subunit methyltransferase F OS=Aliivibrio fischeri (strain MJ11) OX=388396 GN=rsmF PE=3 SV=1
A6TB06	Ribosomal RNA small subunit methyltransferase F OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) OX=272620 GN=rsmF PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01189	Methyltr_RsmB-F	16S rRNA methyltransferase RsmB/F	Family	Interproscan
PF13636	Methyltranf_PUA	RNA-binding PUA-like domain of methyltransferase RsmF	Family	Interproscan
PF17125	Methyltr_RsmF_N	N-terminal domain of 16S rRNA methyltransferase RsmF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001678	Domain	SAM-dependent methyltransferase RsmB-F/NOP2-type domain	Interproscan
IPR023267	Family	RNA (C5-cytosine) methyltransferase	Interproscan
IPR049560	Domain	SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic core	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR027391	Domain	rRNA small subunit methyltransferase F, RNA-binding PUA-like domain	Interproscan
IPR031341	Domain	Ribosomal RNA small subunit methyltransferase F, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22807	NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0001510	Biological Process	RNA methylation	Interproscan
GO:0008173	Molecular Function	RNA methyltransferase activity	Interproscan