Gene detail

Detailed information of HOLI00002.G20830 in Hydra oligactis

Genomic Location: HOLI00002:4271069...4273690
NR annotation: MBP8033068.1, hypothetical protein [Bacteroidia bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00002.g20830.t1

ATGATCAGCATTCAAAAACAAATTCTTCTGCTCTCCGATTTTCACTATAAAGAGTTTGCCGACTATTTGCTCGATACCAATTCCGAATTACCCTATAAGCTCATTTCCACCATTAAAAAACTAAAAGTCCAGCCGGAGTCCGATGCTCTGTGCCAGATGATCTATGCCGCAATTACCCGAACTACCTCAAGCACAATATCCAGCACATTGAAGAATACCTGGGCAAGGGCGAAAAAGAAAAAAGCAAATGACCTGGCCGACTGGCTGATTGATATTGCGGAGAAGATAGAGGATTATACCACGCTCATCGACGTGTATAAATTCCTGGCTCAGCAGGCGTTCATTACGGAATCCAAAGATTCGAACAAATACCATAAGAAAGTAGAGGAGTACCTGGGACTCGAGCAGCTGAAGAACTCCCTGTATATGTACCTCCGTGAGCATCTCTTCTTTAAGGGGAAAGAAAATATTTCCAAATCGCAGGTCAATAAGGACCTTGCTTTTTTTGATAAGTACATCAGCCATCCTTCCAACTCCATCAATATCCTGGCGCGTTTCGGAAAGTACTACGAGCTGAGCTTCCTGGCGCATCCCGATTTTTTCAAAAAAGAAACCGAACAGGAGCTCGATAACCTGGAAAGGGATTTCCTCAATAACTCCTTCGTGTGCTACCAGTACCTCGACGACGTGTATTTCAAGATCCTGGGCCAAAGGCTACAGCACCAGATGAATGCTACCAACACGGAAGCCATGCTGGGTGAGGTGAAGAAGATGAACAGCATCAGCTCCTTCCTCAAATACTGGAAGAGCTATATCAACATTCCCGAGCTGTTTTCCATTTCGGTGCAGGTCAATCACTACATGAGCGCCTATGGCTTTGTGTTCCGCGAAGATTACGAGCAGAAGCTGCCGAAGGATGTGAAGGAAAACATCGCTTTCCTGAAAGCCAAGCTCGAAGACATCCTGGCCAAAGACATCTGGGAGGAAGGGCATATTATTAAATTCATTAATGTGCGTTGTTTCTATTCGGCGCTCCTGCTAACCGGCGACGAAAAAGACAAGCTCAAGTCCATTAAGATCCTGGAAGACACCCTCGTGTCATACCAGCAGATCCCTTTCCAGAAATTCCTCGACGGCATCTTTGTGGCGCTCATCATGGGCTATTTCAGCATGAAAGAATATGACAAGGCTATTTCTACCTACAAGCGCTATAAGAAAATTACGGCCGAGCAGATCGTGATCCGCGAGAATGACCTCACCATCGATGCGTATTATTTTTCGGCACAATACATTACCAACCAGCGTAAGCAATATACCGAGAAGCTAAAGGCAACCTATGAAGAGGCAGAGTCTTACCAGCATATCCGGAACCTGATAGCCGAGCTGGCTTCCTATTTTTCGATCCCGCATAAAGAGGCCTTGGTGAAAAGCATCGTGGCAGAGATCGAACAGCGCCGCGACTACCTGAAAGACAAACGCATTGAAACGATTTATTTTGGCGGCGGCACGCCCAGCCTGCTCTCGGAGCGGGAAGGCTTTATGGTCCTGGAAAAGATCTATAAGCTCTACGATGTGTCGCGCGACGCGGAGATCACGCTCGAGTGCAACCCCGATGACCTTTCGGAGGAGAAGCTGAAAGAGCTGAAGCGCCTGGAAATAAACAGGCTGAGCATTGGCCTGCAAAGCTTTAATGAGGACGAGCTGGTGTGGATGAACCGCGCACATAGCGCCAAAGAAAGCGAGGCCAGTGTGAAACGTGCCCAGGACAGGGGCTTTGAGAACATTACCATTGATCTGATCTATGGCTCTAAATTCTCGAACCTGCGCAGCTGGAAGGGGACCCTGGATAAAGCCATTGCCCTGGAGGTGAAACACATTTCGAGCTACAACCTGACGATAGAGGAAAAGACTAAGCTCGGCCATGACTTTAAGCAAAAGAAGGAAGTGGCCATCGACGATGAGCTGAGCTCGGAGATGTTCCTGGAGATGATCGACCGGCTGGGAAAGAGTGGCTTCATCCATTACGAAATCTCCAATTTCGGGAAAGAAGGGTTTTTCAGCGCTCACAATTCCAATTACTGGAAGGGCAAACATTACCTGGGCCTGGGGCCTTCGGCGCATTCCTTCGATGGCGTATCGAGGCAATGGAACGTCGCGAACAACCATGTCTATATCAAAAAAATAACGGAAGGTAAAGACTATTTTGAAAAAGAAACGCTGACGGAAACGGAGCGCTTCAACGAGTATATGCTCATTGCGCTCCGCACCATGTGGGGTGTTGACCTCGCATACCTCAACGCCGGTTTTGATGCGCAGCTGGTGAAACACTTCTTGCAGGAGGTGGAGCGCTTCATACAGGACGGAAGCATCCGAGTCAAAGAGCAATTTTATACCTTAACGGAAAAAGGAAAGCTGCTGGCGGACCGGATCGCCGGAGATTTGTTTTTGTGA

Transcript

HOLI00002.g20830.t1

Protein

Uniprot

Uniprot term	Description
P54304	Heme chaperone HemW OS=Bacillus subtilis (strain 168) OX=224308 GN=hemW PE=2 SV=3
Q9CGF7	Heme chaperone HemW OS=Lactococcus lactis subsp. lactis (strain IL1403) OX=272623 GN=hemW PE=1 SV=1
P43899	Heme chaperone HemW OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=hemW PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan
PF06969	HemN_C	HemN C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034505	Family	Anaerobic coproporphyrinogen-III oxidase	Interproscan
IPR023404	Homologous_superfamily	Radical SAM, alpha/beta horseshoe	Interproscan
IPR006638	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR007197	Domain	Radical SAM	Interproscan
IPR004559	Family	Heme chaperone HemW-like	Interproscan
IPR010723	Domain	HemN, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13932	COPROPORPHYRINIGEN III OXIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006779	Biological Process	porphyrin-containing compound biosynthetic process	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0004109	Molecular Function	coproporphyrinogen oxidase activity	Interproscan