Gene detail

Detailed information of HOLI00002.G21494 in Hydra oligactis

Genomic Location: HOLI00002:5042579...5045484
NR annotation: MCD6016905.1, hemC [Bacteroidota bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00002.g21494.t1

ATGAGGCATTTGTTCAACGTATCGGCTTCTCTCGACTCGCTGGTGGTCGGAGAGCGTGAGATCATTACGCAGGTGCGCAAAGCTTACGAGTTTTGCAACAGCCTGGGCATTACGGGCGATACGATCCGCCTGGCGGTGAAGCATACCATTGAAACCGCCAAGAAAGTATATACGGAAACCGACATTGCCAAAAATCCGGTATCGATTGTGTCGCTTGCCTACAGGCAGCTGCGCAACCTTGGCATTAAAAATAATGCCCGCATTGTGTTTGTGGGCGCCGGCGAAACCAATGTGAACATGGCCAAATACCTGAAGAAGCATGAGTATGCCAACTTCACGGTGTTCAACCGCACACTGGCCAATGCCGAGAAGCTGGCAAAAGACCTTAACGGAAAAGCCTTTGAGCTTTCTGCCATCTCTGATTTTAAAGAAGGCTTCGATGTGCTGATCACCTGCACGGCTTCCCAGGAGCCTGCAGTAGAAAACCTGCTGAAACGCGAAGGGGAAATTGATGCCTGCAAAGCCATCATCAATGCCAAAGTGGAAGAGTTCAAGCAACTGTTCCAGGAGCGTAAAATTGAGCTGGCTTTCGGCGAAATTCCAAAGCAAATCAGATCCATCAAGGAAACGGCCATCAACGAAGTATTTGCCAAAGACCTGAACCAGCTTGACTCCGAGAGCAAAGAGGTGCTTGAAAAAGTGCTGAGCTACATGGAGAAAAAATACAACGCGCTCACCATCAAAACGGCTAAGAAAGTTTTCCTGGAAGAGAATCCTTGCTCACCCAAATCTTATAACTATGGAATTTTTGGAGAGATCCCCGGCGAAGTTTTCGGCGAGGTTCTGTTCCGGATTGTTTTAGTGATTCTAAAAAGCATTTGGGTTTCCCTCTTATGGCTTTTCAATTTAGGGCAGATTCCCTACATGATCCTCTGGGAAAAAACAACAATAGCATGGCGCGGCGGCCTGGTATTTTTTGCTGTAATTATTATTGGCATTGCCGCTTACTTCAGCTTCCGGGAGCTTGAGGAGGAATTGCTGGCCGGAACCATTGACGTGGCGGTGCATTCACACAAAGACCTGCCTACCGAACATCCGGACGGGCTGATCATTGCCGGCGTCTCATCGCGCGAGAATCCTGCCGACTGGCTGGTGATGCGCGAAGAATGCATGGACGAATCGAAAAAATTCTCCTTAAAGGAAAACGCTAAAGTAGGCACCTCTTCGGCGCGCCGTAAGTCACAACTGCTGGCGTTCAGGCCCGATGTGGAAATCAGCGACCTGAGGGGCAACGTGCCAACGCGCATCCATAAATTACGCGAAGGCCAATACGATGCTATTCTGCTGGCGGCGGCAGGCCTCGAGCGCCTGGAGCTCGACCTCTCCGATTTTCATGTGGAGCAGCTGGAGCCAACGGAATTTATTCCTGCCCCGGCACAGGGTGTACTGGCCTGGCAGATCCGCGAAGACGATTACAAACTGACGGATATTTTTGATGCGATCTGCGATTACGATGTGTTGGTGAACATCAACATCGAGCGCCGCATTCTGAATTTGCTCGACGGTGGCTGCCAGCTTCCTCTGGGCGCGTACTGCGATGTGGAGCTGAACGAGCACGACCGTAAGTTATTTAAAGTGTCGGTGGCCGTGGCCGATGCCTGGAATACACAGCCCAAACAATTGTACTACGAAACAACGAACACGGAAGACCTCCCGGAAAAAATTGTTGAGCATATCCGCCGGATCAGCGGTAAATCGGTTTTCATTTCGCGTGAAGCTTTTGAGAACAACCACCTCAATGCCTGGCTGGAAAAGCTTGGCTTCAAGGTAGAGAACAAAAGCCTGATCGATCTGAAAAAACTCACGATCAAAGAACTACCAAAGAGCGACTGGTTATTTTTCAGCAGCAAGCATGCCGTGGAATTTTTCTTTATGCAAAAGCCCGATATCGGCAACACCAAGATCGGCTGCATGGGAAAAGGCACCTCGCAGGCTTTACGGGAGTTCGGGCAGCGCGCCGATTTTATCGGCACCAGCACTGATACCAAATTGGTAGGCAAGCAGTTTGCGGCACGCGTGGGGCCGGGTAAAGTGGTATTCCCGATTGCGCGCGACAGCATGCGTACCATCCAGTGGCAGTTTGCCAAACCGCAAAACCTCATCGACCTTCCGATCTATGCCACCCTGAAGGTCCCGTATGAGGTATCGCCGAAAACGGATATCCTGGTATTCACCAGCCCGAGCAATGCGGAATCTTTCCTGAAAAGAACAAAGTGCATCCGCACCAGAAGATCATTGCCATGGGAGAGGCCACCGAGAAATCCTTAA

Transcript

HOLI00002.g21494.t1

Protein

Uniprot

Uniprot term	Description
Q1INI6	Porphobilinogen deaminase OS=Koribacter versatilis (strain Ellin345) OX=204669 GN=hemC PE=3 SV=1
A1VCX6	Porphobilinogen deaminase OS=Nitratidesulfovibrio vulgaris (strain DP4) OX=391774 GN=hemC PE=3 SV=1
C0ZAH1	Porphobilinogen deaminase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) OX=358681 GN=hemC PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02602	HEM4	Uroporphyrinogen-III synthase HemD	Family	Interproscan
PF05201	GlutR_N	Glutamyl-tRNAGlu reductase, N-terminal domain	Domain	Interproscan
PF01379	Porphobil_deam	Porphobilinogen deaminase, dipyromethane cofactor binding domain	Domain	Interproscan
PF01488	Shikimate_DH	Shikimate / quinate 5-dehydrogenase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003754	Domain	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase	Interproscan
IPR015895	Domain	Glutamyl-tRNA reductase, N-terminal	Interproscan
IPR018214	Conserved_site	Glutamyl-tRNA reductase, conserved site	Interproscan
IPR022417	Domain	Porphobilinogen deaminase, N-terminal	Interproscan
IPR036108	Homologous_superfamily	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily	Interproscan
IPR000860	Family	Porphobilinogen deaminase	Interproscan
IPR006151	Domain	Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase	Interproscan
IPR036343	Homologous_superfamily	Glutamyl-tRNA reductase, N-terminal domain superfamily	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR036803	Homologous_superfamily	Porphobilinogen deaminase, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11557	PORPHOBILINOGEN DEAMINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004852	Molecular Function	uroporphyrinogen-III synthase activity	Interproscan
GO:0033014	Biological Process	tetrapyrrole biosynthetic process	Interproscan
GO:0008883	Molecular Function	glutamyl-tRNA reductase activity	Interproscan
GO:0050661	Molecular Function	NADP binding	Interproscan
GO:0004418	Molecular Function	hydroxymethylbilane synthase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006783	Biological Process	heme biosynthetic process	Interproscan