Detailed information of HOLI00002.G21541 in Hydra oligactis

Genomic Location: HOLI00002:5085444...5087666
NR annotation: MBI3520783.1, ribonuclease R [Bacteroidota bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O32231Ribonuclease R OS=Bacillus subtilis (strain 168) OX=224308 GN=rnr PE=1 SV=1
Q9WZI1Ribonuclease R OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=rnr PE=3 SV=1
O67834Ribonuclease R OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rnr PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00575S1S1 RNA binding domainDomainInterproscan
PF00773RNBRNB domainDomainInterproscan
PF08206OB_RNBRibonuclease B OB domainDomainInterproscan
PF17876CSD2Cold shock domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003029DomainS1 domainInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR022966Conserved_siteRibonuclease II/R, conserved siteInterproscan
IPR004476FamilyRibonuclease II/ribonuclease RInterproscan
IPR001900DomainRibonuclease II/RInterproscan
IPR011129DomainCold shock domainInterproscan
IPR011805FamilyRibonuclease RInterproscan
IPR013223DomainRibonuclease B, N-terminal OB domainInterproscan
IPR050180FamilyRNR RibonucleaseInterproscan
IPR040476DomainRNase II/RNase R, cold shock domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23355RIBONUCLEASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004540Molecular FunctionRNA nuclease activityInterproscan
GO:0016070Biological ProcessRNA metabolic processInterproscan
GO:0004518Molecular Functionnuclease activityInterproscan
GO:0000175Molecular Function3'-5'-RNA exonuclease activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12573rnr, vacB; ribonuclease REC:3.1.13.1
Transfer RNA biogenesisko03016deepkoala

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