Detailed information of HOLI00002.G21728 in Hydra oligactis

Genomic Location: HOLI00002:5303798...5305038
NR annotation: MBK6983347.1, tRNA pseudouridine(55) synthase TruB [Bacteroidota bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9RB36tRNA pseudouridine synthase B OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202 / NBRC 14942 / NCIMB 11054 / UW101) OX=376686 GN=truB PE=3 SV=1
A6KZJ9tRNA pseudouridine synthase B OS=Phocaeicola vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / CCUG 4940 / NBRC 14291 / NCTC 11154) OX=435590 GN=truB PE=3 SV=1
A6LEL7tRNA pseudouridine synthase B OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152) OX=435591 GN=truB PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01509TruB_NTruB family pseudouridylate synthase (N terminal domain)FamilyInterproscan
PF03692CxxCxxCCPutative zinc- or iron-chelating domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR020103Homologous_superfamilyPseudouridine synthase, catalytic domain superfamilyInterproscan
IPR014780FamilytRNA pseudouridine synthase II, TruBInterproscan
IPR002501DomainPseudouridine synthase II, N-terminalInterproscan
IPR005358FamilyPutative zinc- or iron-chelating domain containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13767TRNA-PSEUDOURIDINE SYNTHASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0001522Biological Processpseudouridine synthesisInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0009451Biological ProcessRNA modificationInterproscan
GO:0009982Molecular Functionpseudouridine synthase activityInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0006400Biological ProcesstRNA modificationInterproscan
GO:1990481Biological ProcessmRNA pseudouridine synthesisInterproscan
GO:0006396Biological ProcessRNA processingInterproscan

TOP