Detailed information of HOLI00002.G21989 in Hydra oligactis

Genomic Location: HOLI00002:5611474...5616388
NR annotation: MBI3518596.1, RluA family pseudouridine synthase [Bacteroidota bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O50310Uncharacterized RNA pseudouridine synthase Cpar_0723 OS=Chlorobaculum parvum (strain DSM 263 / NCIMB 8327) OX=517417 GN=Cpar_0723 PE=3 SV=1
Q45480Uncharacterized RNA pseudouridine synthase YlyB OS=Bacillus subtilis (strain 168) OX=224308 GN=ylyB PE=3 SV=3
P50513Ribosomal large subunit pseudouridine synthase D OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=rluD PE=3 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18962Por_Secre_tailSecretion system C-terminal sorting domainDomainInterproscan
PF01479S4S4 domainDomainInterproscan
PF00849PseudoU_synth_2RNA pseudouridylate synthaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006145DomainPseudouridine synthase, RsuA/RluA-likeInterproscan
IPR006224Conserved_sitePseudouridine synthase, RluA-like, conserved siteInterproscan
IPR026444DomainSecretion system C-terminal sorting domainInterproscan
IPR002942DomainRNA-binding S4 domainInterproscan
IPR006225FamilyPseudouridine synthase, RluC/RluDInterproscan
IPR020103Homologous_superfamilyPseudouridine synthase, catalytic domain superfamilyInterproscan
IPR050188FamilyRluA Pseudouridine SynthaseInterproscan
IPR036986Homologous_superfamilyRNA-binding S4 domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21600MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0001522Biological Processpseudouridine synthesisInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0009451Biological ProcessRNA modificationInterproscan
GO:0009982Molecular Functionpseudouridine synthase activityInterproscan

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