Gene detail

Detailed information of HOLI00002.G21993 in Hydra oligactis

Genomic Location: HOLI00002:5620454...5621618
NR annotation: KAF1857560.1, hypothetical protein Lal_00014569 [Lupinus albus]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
A0M3Z2	Large ribosomal subunit protein uL1 OS=Christiangramia forsetii (strain DSM 17595 / CGMCC 1.15422 / KT0803) OX=411154 GN=rplA PE=3 SV=1
A6LE84	Large ribosomal subunit protein uL1 OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152) OX=435591 GN=rplA PE=3 SV=1
B2RL48	Large ribosomal subunit protein uL1 OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561) OX=431947 GN=rplA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03946	Ribosomal_L11_N	Ribosomal protein L11, N-terminal domain	Domain	Interproscan
PF00687	Ribosomal_L1	Ribosomal protein L1p/L10e family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028364	Family	Ribosomal protein uL1/ribosomal biogenesis protein	Interproscan
IPR000911	Family	Ribosomal protein uL11	Interproscan
IPR020784	Domain	Large ribosomal subunit protein uL11, N-terminal	Interproscan
IPR036796	Homologous_superfamily	Large ribosomal subunit protein uL11, N-terminal domain superfamily	Interproscan
IPR005878	Family	Large ribosomal subunit protein uL1, bacterial-type	Interproscan
IPR016095	Homologous_superfamily	Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domain	Interproscan
IPR023674	Homologous_superfamily	Ribosomal protein uL1-like	Interproscan
IPR023673	Conserved_site	Large ribosomal subunit protein uL1, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36427	54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0015934	Cellular Component	large ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02863	RP-L1, MRPL1, rplA; large subunit ribosomal protein L1	-	Ribosome	ko03011	deepkoala