Gene detail

Detailed information of HOLI00013.G45975 in Hydra oligactis

Genomic Location: HOLI00013:918942...977487
NR annotation: XP_047141674.1, ARF GTPase-activating protein GIT1 isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00013.g45975.t1

ATGAATGTTGTAGTGTTCATAGATCTCTTGGAAGACATATATCACAAGTTCAGTCATCTACGTCTGGCTCCATGGAATACTTCTCTTTTTGCTATGACTCAAAATTTAGTTAGCAATGGCGCAAATTTAATTTGGGAACATTCGTTGACTGATGCAAGTAGGGGAGTTGCTTTAGGAATCCGAAAGCCTAATCCTAATGATGCTGTTCACCCAAGTAAGTCAAGCTTCATAAAAGCAAAGTATCAGTTACTTGCATTTGTGCATCGTCTACCGAATACAGATGACAAATTGTCAGTGGTTGACTTGAGTAAGCAACTTTACTCATCTGTACGAACGGGTAACCTTGAAACGTCACTTCGATTGATTTCTTTGGGAGCTCAAACAAATTATTTCCATCCAGAGAAAGGTAATACACCTTTACACGTAGCAGCTGCAGCAGGGCAAGCAACACAATGTGAGCTTCTTGTAGTTCATGGAGCAGATGCTTCTGCTCTTGATATTAATGAGAAGACTCCAACTGTTGTTGCCATTGAAAACGGACATGTTGATCTTGGCTTCAGACTAATTGAAACTATGTATGAGTTAACTGATCGACTAACATTTTATTTGTGTGGAAGGCGTCCAGATCACAAAAATGGGATAAACTATCTAATTCCTGCCCTTCAAGATCGTGGTATAGGCGCTTCTTCCTCAGCAAAAGAAGCTCGTTGTAAGCTTCAATCTTTAAATAATCGTTTGTTTGAAGAACTTTGTTCAGATGTTTATGATGAAGTAGATCGACGAGAAAATGATGCTGTATGGCTGGCCACTCAGCATCATAGAAAGTTGGTTAGTGATACAGCAGTCCCCTTTCTTCCAGTCAATCCTTCATTTTCATCTACAAGAAACCAGGGTAGACAGAAATTAGCTCGTTTTAACGCTTTGGAGTTTGCAACGCTTATTGTTGATATTCTACATGATGCAAAGAGGCGAGAAGGTCTTAATGTAGATTCTAACAGCCAATCAGCAGGAATAGTAGAAAAGTTAAAACCAATGATTGATCCAGACTATGATGAAATAATGGAAGATAATAAAGAGGCTGACAGTGATGATGGTTCCTCTTTAACAAATATTAATGATGAAGCTTTTCTCAATACTAACAGAACTTTAATTAACGAGCTTGGTTTTAATCCACTAATAAATAACGAGCTACCATATGATATCTACCTTGCATCTAGATATCTAGATATCGAAGAAGAATGCAAGAAGAATGAAGATTTACCATTTCCTTTAATTATAACTTTGCTTCTTTTTCCGATTCGATTTTTCTATTTTCAGATTCTGATAAAGCATTCAGAGTGTGACTCTAAATCTTATAAGAAAAATGAAGAATCTGCGAAAAGTAGTGGAAAAAATCAAGAACTGGAAGAACAAAATCATAGTTTAGGACAAGAAGTCAATCTTCTGCGATCTATGGTTCAAAAATTGATGCAGGAGAATGCATCACTTCGTGCTCAAGTAGCACAGTTAAAGTTTGAGCGAGATGACTTTGAGCAACGTGTTGACCCTAATAAATATGATCGTACAAAGACATCATCCCAAAAGGTTGAAATTCATCCAGCTCCATCGGTGCAAGTATACTCCAAAAATAATAGGGAAGAAATAACCAATGATACTAGATCACACTCCCCTGTTTATTCAAACAATCGAAAATCAGAATCAGATGTTAAAGATCAAAACTACAATGAATCAGAGGAGGATTCTGCAGACCCTTATCGTAGTACAGAAGATGATATAGATTTTCAACAAGAGGCTGGTCCTTCACAAGAAGATATTGTTAATGCTACTGAACAGATTACAAAGAAAATACAAGAGCTGTTGTTAGCTGCTCAAAGTGGACGAAGTAGTAGATATGTACCTTGTTCGAGTAACATATCAGCTGCTGTCAATGATATGGCTAATTTGTTTCCAAAGCATCCTAATGCAGAAAGTGTGCGCATGGCGTTACGCTTGATGATAACAAGTGCAGCTAGATTGCAAGTTGAATGCAGGAGTAGTAGTGCTTTGCCTGAAAGAAATGTTGATCAAGCTATGTTAACTCAGCAAGTCATTCAATGTGCATATGACATAGCTAAAGCTGCGAAACACCTTGTTACAACGTTCAATTCCGCTTGA

Transcript

HOLI00013.g45975.t1

Protein

Uniprot

Uniprot term	Description
Q66H91	ARF GTPase-activating protein GIT2 OS=Rattus norvegicus OX=10116 GN=Git2 PE=1 SV=1
Q14161	ARF GTPase-activating protein GIT2 OS=Homo sapiens OX=9606 GN=GIT2 PE=1 SV=2
Q9Z272	ARF GTPase-activating protein GIT1 OS=Rattus norvegicus OX=10116 GN=Git1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08518	GIT_SHD	Spa2 homology domain (SHD) of GIT	Family	Interproscan
PF12205	GIT1_C	G protein-coupled receptor kinase-interacting protein 1 C term	Domain	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013724	Domain	GIT, Spa2 homology (SHD) domain	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR022018	Domain	ARF GTPase-activating protein GIT1, C-terminal	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR047161	Family	ARF GTPase-activating protein Git-like	Interproscan
IPR038508	Homologous_superfamily	ArfGAP domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46097	G PROTEIN-COUPLED RECEPTOR KINASE INTERACTING ARFGAP	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0007420	Biological Process	brain development	Interproscan
GO:0008277	Biological Process	regulation of G protein-coupled receptor signaling pathway	Interproscan
GO:0031267	Molecular Function	small GTPase binding	Interproscan
GO:0032012	Biological Process	regulation of ARF protein signal transduction	Interproscan
GO:0036465	Biological Process	synaptic vesicle recycling	Interproscan
GO:0045202	Cellular Component	synapse	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12487	GIT2; G protein-coupled receptor kinase interactor 2	-	Membrane trafficking	ko04131	deepkoala