Gene detail

Detailed information of HOLI00014.G10235 in Hydra oligactis

Genomic Location: HOLI00014:1143200...1146494
NR annotation: WP_105259311.1, methylmalonyl-CoA mutase family protein [Rhodoferax sp. TS-BS-61-7]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00014.g10235.t1

ATGACCGATCTGTCCGCCGACTTCAAAGCCTTGGCCAACTACCGACCCACGCACAAGGTGCGTTTTGTTACCGCGGCCAGCCTGTTCGACGGGCACGATGCGGCCATCAACATCATGCGGCGCATCCTCCAGGGCATGGGCGCCGAGGTCATCCACCTGGGCCACAACCGCAGTGTGGACGAGGTGGTGACTGCGGCTTTGCAGGAAGACGTGCAGGGCATTGCCATCAGCTCTTACCAGGGCGGGCATGTGGAGTACTTCAAGTACATGGTTGATTTGCTCAAAGCCCGTGGCGGCGCGCACATCCAGGTGTTTGGCGGCGGCGGCGGCGTTATCGTGCCGGCCGAAATCCGCGAGCTGCATGCCTACGGCGTGGCCCGCATCTACAGTCCCGAAGACGGCCAGCGCATGGGTCTCGCCGGCATGATTGGCGAGATGGTGATGAGGTGTGATAAGGACATCACCGCGCTGGCTCCCACCGATCTTGGCGCTATCCAGGGCCATACGGAAGCCAGCTGGCGTGCGCTGTCCCAATTGCTCACCGCCATTGAGGCTTCCAAGGTAAATCCGGCGTTAGCCCAGGAGATTCGTGCGCAAGAAGCTATCAAAAAGATAGCGGCGGTGGGTATTACCGGCACGGGCGGTGCCGGCAAGTCCAGCCTGACCGACGAGCTGATCCGCCGCCTGCGGCTGGACCAAGACGACAGTCTGCGTGTGGCGGTGATCTCGATTGACCCGTCGCGCCGTAAGAGCGGTGGTGCACTCTTAGGTGACCGTATTCGCATGAATGCCATATCGCCTTGGCAGCAAGGTTCACGTGTCTTTATGCGTTCCCTGGCCACACGGGACTTTGGCTCCGAAATCAGCGCCGCCCTGCCCGACGTGATTGCCGCCTGCAAGGTGGCGGGGTTCGATCTGGTGGTGGTGGAGACCTCGGGCATTGGCCAGGGGGATGCAGCGATTGCACCGCTGGTGGATGTGCCGGTGTATGTGATGACGCCCGAGTTTGGCGCGGCCAGCCAGCTGGAAAAAATCGACATGCTGGACTTTGCCGAGTTTGTGGCCATCAACAAGTTCGACCGCAAGGGCGCCAGCGACGCGCTGCGCGATGTGTCCAAGCAGGTTCAGCGTAACAAGGAAGCCTGGACCACACCCGCTGACCAGATGCCTGTGTTCGGCACCATGGCCGCGCGTTTTAACGACGACGGTGTGACCGCGCTGTATCAGGCGCTGTTGCCGCGCCTGCAGGCCCTGGGTGTGCCGCTGCAGGACGGCATGTTGCCCAAGGTGCATGTACGCCACAGCAGCAACCAGACACCCGTGGTGCCCGCAGCCCGCACGCGTTACCTGGCTGAAATCAGTGACACCGTGCGGGGCTATAAAAAACGCGCGCGGGAACAGGCCAAACTGGCCCGCGAGATCCAGCAGCTGCGGGCCAGCGGCCGCATGCTGTATGAGGCCAACCCCAACAAGCAACGCGCCGTTGCCGCTGTGAATGGGCTGGCCGCTTTGCGTGAAGAGCGCATGGGCGCCGCCGAACGCAAGCTGCTGGCCCAGTGGCCCGAGATGCAAAAAGGCCTACGCGGGCGACGAGTGGCGCTGCCGCAGTACGAAGACCAGGGCGAGGTATTGCAGTGGCTGATGCTGGACAACGTGCCCGGCAGCTACCCCTACACCGCAGGCACCTTTGCCTTCAAGCGCGAGGGCGAAGACCCCACACGTATGTTCGCGGGCGAGGGCGATGCGTTTCGCACCAACACACGTTTCAAGCTGCTCTCCTGCGGCATGGCCGCCAAGCGCCTGAGCACCGCGTTCGACTCGGTCACGCTCTACGGCAACGACCCCGATCCGCGGCCCGACATCTATGGCAAGGTGGGCAATAGCGGCGTGAGCATCGCTACGCTGGATGACATGAAGGTGCTGTACGGCGGCTTTGATTTGTGCAGCCCGTCCACCAGCGTGTCCATGACCATCAACGGCCCGGCGCCCAGCATCCTGGCCATGTTCATGAACACGGCCATCGACCAGAACATCGAGAAGTTCCAGACCGACAACGGCCGGCAGCCCACCGACACCGAGGTCGCCAAGATCCGCGAATGGGTGCTGGCCAATGTGCGCGGCACGGTGCAGGCCGACATTCTGAAGGAAGACCAGGGCCAGAACACCTGCATCTTCAGCACCGAGTTTTCATTGAAAGTGATGGGCGACATTGCCGAGTACTTTGTGCATCACGACGTGCGCAACTTCTACAGCGTGTCCATCAGTGGGTACCACATTGCCGAGGCAGGCGCCAACCCCATCAGCCAGCTTGCGTTCACGCTGTCCAACGGCTTCACGTTTGTGGAGGCGTACCTGGCGCGTGGCATGCACATCGATGACTTCGCGCCCAACCTGTCCTTCTTCTTCAGCAACGGCATGGACCCCGAATACACCGTGATGGGCCGCGTGGCCCGCCGCATTTGGGCGGTGGCCATGAAGGAGAAGTACGGCGCGAATGAACGGTCTCAGAAGTTGAAGTACCACATCCAGACCAGTGGCCGCAGCCTGCACGCGCAGGAAATCCAGTTCAACGACATCCGCACCACGCTGCAAGCGCTGATTGCCATCTACGACAACTGCAACAGCCTGCACACCAATGCGTTTGACGAGGCCATCACCACGCCCACCGAAGACAGCGTGCGCCGTGCCATGGCCATCCAGCTCATCATCAACCGCGAATGGGGCCTGGCCAAGAACGAGAACCCTTCACAAGGTGCCTTCATCATCGAAGAGCTGACCGAGCTGGTGGAAGAGGCCGTGCTCAAAGAGTTTGAAAGCATTGCCGAGCGTGGCGGTGTACTGGGTGCCATGGAAACCGGTTACCAGCGCGGCAAGATCCAGGACGAGAGCATGCACTACGAGATGCTCAAACATACCGGTGAGCTGCCCATCATCGGCGTCAACACCTTCCGCAACCCGCATGGCGACCAGGTGATGGAGAAGCTGGAGCTGGCGCGCAGCACGGACGAAGAAAAGCAAAACCAGCTCAAACGCCTGGCCGATTTCCACACCCGCCATGCGGACGCGGCGCCCGCCATGCTGAAAAAGCTGCAGCAGGCCGTCATTGACAACCAGAATGTCTTCAACGTGCTGATGGACGCCGTGCGGGTCTGCTCGCTGGGCCAGATCACCAGCGCGCTGTTCGAGGTGGGTGGGCAGTACCGCCGCAATATGTAA

Transcript

HOLI00014.g10235.t1

Protein

Uniprot

Uniprot term	Description
Q1LRY0	Fused isobutyryl-CoA mutase OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) OX=266264 GN=icmF PE=1 SV=1
Q146L7	Fused isobutyryl-CoA mutase OS=Paraburkholderia xenovorans (strain LB400) OX=266265 GN=icmF PE=1 SV=1
Q5Z110	Fused isobutyryl-CoA mutase OS=Nocardia farcinica (strain IFM 10152) OX=247156 GN=icmF PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03308	MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	Domain	Interproscan
PF02310	B12-binding	B12 binding domain	Domain	Interproscan
PF01642	MM_CoA_mutase	Methylmalonyl-CoA mutase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036724	Homologous_superfamily	Cobalamin-binding domain superfamily	Interproscan
IPR006158	Domain	Cobalamin (vitamin B12)-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR052040	Family	GTPase and isobutyryl-CoA mutase domain-containing protein	Interproscan
IPR016176	Homologous_superfamily	Cobalamin (vitamin B12)-dependent enzyme, catalytic	Interproscan
IPR006098	Domain	Methylmalonyl-CoA mutase, alpha chain, catalytic	Interproscan
IPR006099	Domain	Methylmalonyl-CoA mutase, alpha/beta chain, catalytic	Interproscan
IPR033669	Family	Fused isobutyryl-CoA mutase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43087	LYSINE/ARGININE/ORNITHINE TRANSPORT SYSTEM KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0031419	Molecular Function	cobalamin binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004494	Molecular Function	methylmalonyl-CoA mutase activity	Interproscan
GO:0016866	Molecular Function	intramolecular transferase activity	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0006637	Biological Process	acyl-CoA metabolic process	Interproscan
GO:0034784	Molecular Function	pivalyl-CoA mutase activity	Interproscan
GO:0047727	Molecular Function	isobutyryl-CoA mutase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11942	icmF; isobutyryl-CoA mutase	EC:5.4.99.13	Enzymes with EC numbers	-	deepkoala