Gene detail

Detailed information of HOLI00014.G10261 in Hydra oligactis

Genomic Location: HOLI00014:1171088...1172898
NR annotation: WP_105261973.1, RNA ligase RtcB family protein [Rhodoferax sp. TS-BS-61-7]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P0DX91	RNA-splicing ligase RtcB2 OS=Escherichia coli (strain ATCC 25922 / DSM 1103 / LMG 8223 / NCIMB 12210 / NCTC 12241 / WDCM 00013 / Seattle 1946) OX=1322345 GN=rtcB2 PE=1 SV=1
P0DX90	Peptide chain release factor homolog OS=Escherichia coli (strain ATCC 25922 / DSM 1103 / LMG 8223 / NCIMB 12210 / NCTC 12241 / WDCM 00013 / Seattle 1946) OX=1322345 GN=prfH PE=1 SV=1
P28369	Putative peptide chain release factor homolog OS=Escherichia coli (strain K12) OX=83333 GN=prfH PE=5 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01139	RtcB	tRNA-splicing ligase RtcB	Family	Interproscan
PF00472	RF-1	RF-1 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001233	Family	RNA-splicing ligase, RtcB	Interproscan
IPR017509	Family	Peptide chain release factor homolog	Interproscan
IPR036025	Homologous_superfamily	tRNA-splicing ligase RtcB-like superfamily	Interproscan
IPR017510	Family	RNA-splicing ligase RtcB2	Interproscan
IPR045853	Homologous_superfamily	Peptide chain release factor class I superfamily	Interproscan
IPR000352	Domain	Peptide chain release factor class I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11118	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008452	Molecular Function	RNA ligase activity	Interproscan
GO:0000971	Biological Process	obsolete tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate	Interproscan
GO:0003972	Molecular Function	RNA ligase (ATP) activity	Interproscan
GO:0003747	Molecular Function	translation release factor activity	Interproscan
GO:0006415	Biological Process	translational termination	Interproscan