Gene detail

Detailed information of HOLI00014.G9377 in Hydra oligactis

Genomic Location: HOLI00014:143211...144704
NR annotation: WP_105261539.1, indole-3-glycerol phosphate synthase TrpC [Rhodoferax sp. TS-BS-61-7]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q21SE8	Indole-3-glycerol phosphate synthase OS=Albidiferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) OX=338969 GN=trpC PE=3 SV=1
Q123F4	Indole-3-glycerol phosphate synthase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) OX=296591 GN=trpC PE=3 SV=1
A1VTG7	Indole-3-glycerol phosphate synthase OS=Polaromonas naphthalenivorans (strain CJ2) OX=365044 GN=trpC PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03167	UDG	Uracil DNA glycosylase superfamily	Domain	Interproscan
PF00218	IGPS	Indole-3-glycerol phosphate synthase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036895	Homologous_superfamily	Uracil-DNA glycosylase-like domain superfamily	Interproscan
IPR018085	Active_site	Uracil-DNA glycosylase, active site	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR011060	Homologous_superfamily	Ribulose-phosphate binding barrel	Interproscan
IPR045186	Family	Indole-3-glycerol phosphate synthase	Interproscan
IPR013798	Domain	Indole-3-glycerol phosphate synthase domain	Interproscan
IPR002043	Family	Uracil-DNA glycosylase family 1	Interproscan
IPR001468	Conserved_site	Indole-3-glycerol phosphate synthase, conserved site	Interproscan
IPR005122	Domain	Uracil-DNA glycosylase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22854	TRYPTOPHAN BIOSYNTHESIS PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0016799	Molecular Function	hydrolase activity, hydrolyzing N-glycosyl compounds	Interproscan
GO:0000162	Biological Process	tryptophan biosynthetic process	Interproscan
GO:0004425	Molecular Function	indole-3-glycerol-phosphate synthase activity	Interproscan
GO:0004640	Molecular Function	phosphoribosylanthranilate isomerase activity	Interproscan
GO:0004844	Molecular Function	uracil DNA N-glycosylase activity	Interproscan
GO:0006284	Biological Process	base-excision repair	Interproscan
GO:0006568	Biological Process	tryptophan metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13498	trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase	EC:4.1.1.48 EC:5.3.1.24	Phenylalanine, tyrosine and tryptophan biosynthesis	ko00400	deepkoala