Gene detail

Detailed information of HOLI00014.G9543 in Hydra oligactis

Genomic Location: HOLI00014:331524...333053
NR annotation: NCV78952.1, elongation factor Tu [Burkholderiaceae bacterium]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q123F6	Elongation factor Tu OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) OX=296591 GN=tuf1 PE=3 SV=1
A1VIP8	Elongation factor Tu OS=Polaromonas naphthalenivorans (strain CJ2) OX=365044 GN=tuf1 PE=3 SV=1
Q21SF0	Elongation factor Tu 1 OS=Albidiferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) OX=338969 GN=tuf1 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF03144	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF00338	Ribosomal_S10	Ribosomal protein S10p/S20e	Domain	Interproscan
PF03143	GTP_EFTU_D3	Elongation factor Tu C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031157	Conserved_site	Tr-type G domain, conserved site	Interproscan
IPR041709	Domain	Elongation factor Tu (EF-Tu), GTP-binding domain	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR050055	Family	Elongation factor Tu GTPase	Interproscan
IPR001848	Family	Small ribosomal subunit protein uS10	Interproscan
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR033720	Domain	Elongation factor Tu, domain 2	Interproscan
IPR027486	Domain	Small ribosomal subunit protein uS10 domain	Interproscan
IPR004161	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036838	Homologous_superfamily	Small ribosomal subunit protein uS10 domain superfamily	Interproscan
IPR009001	Homologous_superfamily	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	Interproscan
IPR018268	Conserved_site	Small ribosomal subunit protein uS10, conserved site	Interproscan
IPR004160	Domain	Translation elongation factor EFTu/EF1A, C-terminal	Interproscan
IPR004541	Family	Translation elongation factor EFTu/EF1A, bacterial/organelle	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43721	ELONGATION FACTOR TU-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003746	Molecular Function	translation elongation factor activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006414	Biological Process	translational elongation	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02358	tuf, TUFM; elongation factor Tu	-	Exosome	ko04147	deepkoala