Gene detail

Detailed information of HOLI00014.G9922 in Hydra oligactis

Genomic Location: HOLI00014:759123...759819
NR annotation: WP_105262909.1, DNA oxidative demethylase AlkB [Rhodoferax sp. TS-BS-61-7]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P05050	Alpha-ketoglutarate-dependent dioxygenase AlkB OS=Escherichia coli (strain K12) OX=83333 GN=alkB PE=1 SV=1
P37462	Alpha-ketoglutarate-dependent dioxygenase AlkB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=alkB PE=3 SV=2
P0CAT7	Alpha-ketoglutarate-dependent dioxygenase AlkB homolog OS=Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15) OX=190650 GN=alkB PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13532	2OG-FeII_Oxy_2	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004574	Family	Alkylated DNA repair protein AlkB	Interproscan
IPR037151	Homologous_superfamily	Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily	Interproscan
IPR027450	Domain	Alpha-ketoglutarate-dependent dioxygenase AlkB-like	Interproscan
IPR005123	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16557	ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008198	Molecular Function	ferrous iron binding	Interproscan
GO:0035513	Biological Process	oxidative RNA demethylation	Interproscan
GO:0035515	Molecular Function	oxidative RNA demethylase activity	Interproscan
GO:0035516	Molecular Function	broad specificity oxidative DNA demethylase activity	Interproscan
GO:0035552	Biological Process	obsolete oxidative single-stranded DNA demethylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03919	alkB; DNA oxidative demethylase	EC:1.14.11.33	DNA repair and recombination proteins	ko03400	deepkoala