Gene detail

Detailed information of HOLI00059.G25552 in Hydra oligactis

Genomic Location: HOLI00059:36272...38327
NR annotation: WP_105261370.1, acyl-CoA dehydrogenase family protein [Rhodoferax sp. TS-BS-61-7]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00059.g25552.t1

ATGCTGCTGACCCAAGACCAGGAAATGGTGCGCGACGCCGTACGCGCCTTTGCGCAGGCCGAACTCTGGCCGAATGCCGCCCAGTGGGACAAGGACCACACCTTTCCCAAGGCCGCCCATCAGGGGCTGGCCGCGCTGGGTGCCTATGGGATCTGCGTACCTGAGCACCAGGGCGGCGCGGGGCTGGACTATGTGACGCTGGCGCTGGTGCTGGAAGAAATTGCCGCGGGCGACGGCGGCACCAGCACGGTCATCAGCGTGACCAACTGCCCGGTCAACGCCATCCTCATGAAATACGGCAACGCGCAGCAGCACAAGCAATGGTTGGAGCCGCTGGCGCAGGGCCAACTGCTGGGCGCCTTCTGCCTGACCGAGCCGCATGTGGGCAGCGATGCGTCGTCACTCCGCACCACGGCCGTGAGGGATGGCGACAGCTACGTCATCAACGGCGTCAAGCAATTCATCACCAGCGGCAAGCATGGCGATGTGGCCATCGTCATCGCAGTCACCGACAAGGGGGCGGGCAAGAAGGGCATGAGCGCATTCCTGGTGCCCACCAACGCGCCCGGCTATGCGGTGGCGCGGCTGGAAGACAAGCTCGGCCAGCACAGCAGCGACACCGCGCAGATCAACTTTGACAACTGCCGCATCCCGGCCGAGAACTTGATTGGCAAAGAGGGCGAGGGCTATGGCATCGCCCTGGGCGGGTTGGAGGGCGGGCGCATTGGCATTGCCGCGCAAAGCGTGGGCATGGCGCGCAGCGCGTTTGATGTGGCCGTGGCCTATGCCAAGGACCGACAGAGCTTTGGCCAACCCATCTTCAACCACCAGGCCGTGGGCTTTCGTCTGGCCGAATGCGCCACACAGATCGAGGCCGCGCGCCAGCTCATCTGGCATGCCGCGGCACTGCGCGATGCAGGCCGTCCGTGTCTGAAAGAGGCTGCCATGGCCAAGCTGTTTGCCAGCGAAATGGCCGAGCGCGTCTGCAGTGCCGCCATCCAGACCCTGGGTGGCTACGGCTATGCACGAGCGACGTGCAGAAGATCATCATCCAGCGCGCGCTGGGCTGAGGCATCCATGGCTGTCACCTTGCCTCCCGGTGTCACCGTTTTTGAGCGCGGCTGGCTCTCCAGCAACAACATCCTGATCCAGGGGCGCGACAGCACGGCGTTGATCGATAGCGGCTACTGCACCCATGCGGACCAGACCCTGGCGCTGGTGGATTCGGCCCTGCAGGGCCGGCCGCTGGACCTGCTGCTCAATACCCACCTGCACAGCGACCACTGTGGTGGCAATGCCGCGCTGCAGGCCCGCTACCCGGCGCTGCAGACCCACATCCCGCCCGGCCATGCCGAGTACGTGCGTGTGTGGGATGCACATGCGCTGAGCTACACGCCCACGGGGCAGAACTGCCCGCGCTTTCATCTGGATGCCACCTTGCAGCCCGGTACCACCATGCGGCTGGGCGATCTGCTGTGGCAGGTGCATGCCGCGCCGGGGCACGACCCGCATTCGGTCATCCTGTTCGAGCCCGCCAGCCGCACGCTGGTGTCGGCCGACGCGCTGTGGGAACGCGGTTTTGGTGTGGTGTTCCCGGAGCTGGATGGCGAGGGCGCGTTTGACGAGGTGGCGGCCACGCTGGACCTTATTGAGCGCCTGAACCCTGCCGCCGTCATTCCCGGCCACGGCGCTGCGTTTGCCGATGCGCCCGCAGCCATCGCGTTTGCGCGCCAGCGACTGAACGGTTTTGTGCAGAACCCGGCCAAACACCTGCAGTACGCGGCCAAGGTGTTGCTCAAGTTCAAGCTGCTGGAAGCCCAGCGCCTGGAGATGGGCGCGCTGCTGGGCTGGGCCCGTGGCACGCCGTACTTTGCGGCCATGCTGGCTACGCATTTTGCCGGGCAGAGCTTTGAAGCCGCTGCCGGCCAACTGGTACAAGACTTGGTGCGCTCGGGCGCGGCCACGGTGCAGGGGTCACTGGTGCTCAACGCTTGA

Transcript

HOLI00059.g25552.t1

Protein

Uniprot

Uniprot term	Description
P15651	Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Acads PE=1 SV=2
Q5RAS0	Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pongo abelii OX=9601 GN=ACADS PE=2 SV=1
P16219	Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=ACADS PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF00753	Lactamase_B	Metallo-beta-lactamase superfamily	Domain	Interproscan
PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF02771	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006091	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR001279	Domain	Metallo-beta-lactamase	Interproscan
IPR009100	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR036866	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR036250	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR009075	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR013786	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan
IPR046373	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR037069	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43884	ACYL-COA DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0003995	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan