Genomic Location: HOLI00059:818489...819857
NR annotation: WP_146097284.1, RluA family pseudouridine synthase [Rhodoferax sp. TS-BS-61-7]
| CDS | |||||
| HOLI00059.g26241.t1 | |||||
| Transcript |
| HOLI00059.g26241.t1 |
| Protein |
| HOLI00059.G26241 |
| Uniprot term | Description |
|---|---|
| P44433 | Ribosomal large subunit pseudouridine synthase C OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=rluC PE=3 SV=1 |
| Q8ZQ16 | Ribosomal large subunit pseudouridine synthase C OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=rluC PE=3 SV=1 |
| Q8Z7J7 | Ribosomal large subunit pseudouridine synthase C OS=Salmonella typhi OX=90370 GN=rluC PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01479 | S4 | S4 domain | Domain | Interproscan |
| PF00849 | PseudoU_synth_2 | RNA pseudouridylate synthase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002942 | Domain | RNA-binding S4 domain | Interproscan |
| IPR006225 | Family | Pseudouridine synthase, RluC/RluD | Interproscan |
| IPR036986 | Homologous_superfamily | RNA-binding S4 domain superfamily | Interproscan |
| IPR006145 | Domain | Pseudouridine synthase, RsuA/RluA-like | Interproscan |
| IPR050188 | Family | RluA Pseudouridine Synthase | Interproscan |
| IPR006224 | Conserved_site | Pseudouridine synthase, RluA-like, conserved site | Interproscan |
| IPR020103 | Homologous_superfamily | Pseudouridine synthase, catalytic domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21600 | MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0001522 | Biological Process | pseudouridine synthesis | Interproscan |
| GO:0009451 | Biological Process | RNA modification | Interproscan |
| GO:0009982 | Molecular Function | pseudouridine synthase activity | Interproscan |
| GO:0000455 | Biological Process | enzyme-directed rRNA pseudouridine synthesis | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K06179 | rluC; 23S rRNA pseudouridine955/2504/2580 synthase | EC:5.4.99.24 | Ribosome biogenesis | ko03009 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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