Gene detail

Detailed information of HOLI00059.G26500 in Hydra oligactis

Genomic Location: HOLI00059:1096218...1098284
NR annotation: WP_105259661.1, diguanylate cyclase [Rhodoferax sp. TS-BS-61-7]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00059.g26500.t1

ATGCAGGCTGACGGGCCTTCCCGCATGGTGAAGCGGCCAACCGGGTCAGGTGGGGAACCAAGCAGCCCTAACTGTGGAGCCAGTGCCGGGGTCAGGCTCGTCAACCCCCATTCCATCCCTTGCCACCCTGAGGATTCCGGGAATGACTCTCAACGTGTGTTCCCGTTGGGTTGGTGCAGTGCTGCTGGCATGCGGAGCAGCGGTGGCCGCTTGGCCGCTACACCGGGTCCGCCACCGATTTCCCCTCATTGCGCTCACGGACACCACCCCACCCGCATAGAGCTGGGCGCCCATCTGGCCTACCTGGAAGACCCGGATCGCAAACTCTCGCAGGAGCAGGCCAGCAGCCCGCTGCAGACCTGGGTCGGCATGGACCGTACCAGCCCCAACTTCGGCTTTACCGACAAGGCGTACTGGTTCCGCTTCGCACTGACAACCGCACAGACAAAACCCAGCAGCGCCTGCTGGAGCTGCCCCGAACCTTCATCGACGACCCCTTGTGCAACGCGTGGTGCAGCACCAGAACCTGGTGATGCCGCTCACCCTGGCCCCCGGTGTGCACCAGATCTACCTGCGCATGGCCTCCAGCGGCACCATCGAGGCGCCGCTGCGCCTGTGGGAGCCTGCCGCCTTCAAGCCGCCGCGGCCAAAGAACATTTGCTGGCTGGTGCCGTGCTGGGCATGCTGGTGGTGATGATCGTCTACAACCTGTTCATCTACCTGTCCACGCGCGACATCAACTACCTTTACTACATCGCCTTCGTGGCCAGCTACCTGTTGTTCTGGAGCACGCTGTGGGGCTACACCTTTGCCTATGTGTGGCCCAACGAGATCCGCTGGAACAGCATTGCGGTGCCGGTGTTCATAGCCTCAGCCTGCGTAGCGGCCAGCCTGTTTGCCGACAGCTTTCTCAAACTGCGCCGCTTCTCGCGCCCGCTGCACTGGGGCGTGCTGGGCCTGGCCTGGGCGAGTGCGCTGCTGCTGGCGGGCAGCTTTGTGCTGCCCTACCAGCTCATCATCCGGGTCAACTCGGCCATGATTCTGGTGGTGTCGGTGGTGGCGCTGGTGTGTGGCTACTGGCGCTGGTGGGCTGGCGCGCGTTTTGCGCGTTTCTACTGCCTGTCCTGGACCTCGGTGTTCGTGGGGGTGAGCGTGTTGACGATTGGCAAGTTCGGCCTGCTGCCGTCCAACTTCTGGATCGATAACGCTTCGCAAATCGGTGTCATGCTGCTGGTGCTGCTGCTGTCCTTCACGCTGGCCGACCGCATCAACACCGACCGCAGCCTGCGCATCAATGCCCAGGCCGTGGCGCTGGCCCATGCACAAAAAGCCCGCGCCTCACAAAAAGCCCTGATCGACTCCACCGCCCAAGCCAACCGCGAGCTGGAAAGCCGCGTGCAGGAACGCACCAACGAGCTGCACGATGCGCTGGAAAAACTGCAGACCGTGAACGCGCAGCTGCAGCGCCTCTCCAACACTGACAGCCTGACCCAGGTCGGCAACCGTGCCTACTTTGACGAAGCCCTGCAGACCGAACACAAACGCGCCAGCCGCCAGAAGCAGCCGCTGGCCCTGCTGCTGCTGGACATCGACCACTTCAAATCCATCAACGACACCTGGGGCCACCCTGCGGGTGACGCCTGCCTGCGTTACCTGGCCGACTTTCTGCGCCAAAAGGTGCAGCGCGCCGGTGATGTGCTGGCCCGTTACGGCGGTGAAGAGTTTGTGGTGCTGCTGATCAACAGCACCCTGGGCGACGCGCTGGACGTGGCAGAAGAGTTGCGCGCCGACATCGCCAGGCTGGAGATCCCGATCGAGGGCCGCAACCTGCGCATCACGGCCAGCTTTGGGGTGGCCAGCGCGATTCCGGCCAGCCTGACTTCGACCGCTACGCTGGTGGCCGATGCCGACAAGGCCCTGTACGAGGCCAAACACCACGGGCGCAACTGCGCGCGCCGCAGTGCCACGCATCAGCACCCGGCAAACCAGCTGATCCGCTACTAA

Transcript

HOLI00059.g26500.t1

Protein

Uniprot

Uniprot term	Description
Q55434	Phytochrome-like protein cph2 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=cph2 PE=1 SV=1
Q73RG3	Diguanylate cyclase A OS=Treponema denticola (strain ATCC 35405 / DSM 14222 / CIP 103919 / JCM 8153 / KCTC 15104) OX=243275 GN=dgcA PE=1 SV=1
Q9A5I5	Response regulator PleD OS=Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15) OX=190650 GN=pleD PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07695	7TMR-DISM_7TM	7TM diverse intracellular signalling	Domain	Interproscan
PF00990	GGDEF	Diguanylate cyclase, GGDEF domain	Domain	Interproscan
PF07696	7TMR-DISMED2	7TMR-DISM extracellular 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011623	Domain	7TM-DISM receptor, extracellular domain, type 1	Interproscan
IPR050469	Family	Bacterial Diguanylate Cyclase	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000160	Domain	GGDEF domain	Interproscan
IPR011622	Domain	7TM-DISM receptor, extracellular domain, type 2	Interproscan
IPR029787	Homologous_superfamily	Nucleotide cyclase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45138	REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0043709	Biological Process	cell adhesion involved in single-species biofilm formation	Interproscan
GO:0052621	Molecular Function	diguanylate cyclase activity	Interproscan
GO:1902201	Biological Process	negative regulation of bacterial-type flagellum-dependent cell motility	Interproscan